RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 PPP2R5BQ15173 497 aa15.83■□□□□ 0.12
RTF1-201ENST00000389629 NDUFA10O95299 355 aa15.83■□□□□ 0.12
RTF1-201ENST00000389629 PCK1P35558 622 aa15.83■□□□□ 0.12
RTF1-201ENST00000389629 NNTQ13423 1086 aa15.83■□□□□ 0.12
RTF1-201ENST00000389629 MUM1L1Q5H9M0 696 aa15.83■□□□□ 0.12
RTF1-201ENST00000389629 C6orf50Q9HD87 102 aa15.83■□□□□ 0.12
RTF1-201ENST00000389629 STK38LQ9Y2H1 464 aa15.83■□□□□ 0.12
RTF1-201ENST00000389629 H7C1W4 665 aa15.83■□□□□ 0.12
RTF1-201ENST00000389629 PTPREP23469 700 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 CTSWP56202 376 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 FBXW10Q5XX13 1052 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 DNM2P50570 870 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 NEDD9Q14511 834 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 SV2BQ7L1I2 683 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 TRMT1LQ7Z2T5 733 aaKnown RBP15.82■□□□□ 0.12
RTF1-201ENST00000389629 FMNL3Q8IVF7 1028 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 PAGE5Q96GU1 130 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 LRRC27Q9C0I9 530 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 MRPL44Q9H9J2 332 aaKnown RBP15.82■□□□□ 0.12
RTF1-201ENST00000389629 POLD4Q9HCU8 107 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 B4DLN1 442 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 KRT79Q5XKE5 535 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 ZNF446Q9NWS9 450 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 COL9A3Q14050 684 aaPredicted RBP15.82■□□□□ 0.12
RTF1-201ENST00000389629 DYMQ7RTS9 669 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 ZBTB38Q8NAP3 1195 aaPredicted RBP15.82■□□□□ 0.12
RTF1-201ENST00000389629 CCDC26Q8TAB7 109 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 EPB41L5Q9HCM4 733 aa15.82■□□□□ 0.12
RTF1-201ENST00000389629 CPSF2Q9P2I0 782 aaKnown RBP15.82■□□□□ 0.12
RTF1-201ENST00000389629 TCP1P17987 556 aaKnown RBP15.81■□□□□ 0.12
RTF1-201ENST00000389629 KRT31Q15323 416 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 SLC9C1Q4G0N8 1177 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 LMBR1Q8WVP7 490 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 NCAPGQ9BPX3 1015 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 PPP1R12CQ9BZL4 782 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 SWAP70Q9UH65 585 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 RASAL2Q9UJF2 1139 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 MROH7-TTC4A0A0A0MT08 1334 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 RFX7Q2KHR2 1363 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 CCNT1O60563 726 aaKnown RBP15.81■□□□□ 0.12
RTF1-201ENST00000389629 BAG3O95817 575 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 PCCAP05165 728 aaPredicted RBP15.81■□□□□ 0.12
RTF1-201ENST00000389629 PARP1P09874 1014 aaKnown RBP15.81■□□□□ 0.12
RTF1-201ENST00000389629 DAAM2Q86T65 1068 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 KAZALD1Q96I82 304 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 PIH1D3Q9NQM4 214 aaKnown RBP15.81■□□□□ 0.12
RTF1-201ENST00000389629 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.81■□□□□ 0.12
RTF1-201ENST00000389629 FRMPD1Q5SYB0 1578 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 PDE8BO95263 885 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 TXKP42681 527 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 BCAMP50895 628 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 CNNM4Q6P4Q7 775 aa15.81■□□□□ 0.12
RTF1-201ENST00000389629 SPATS2Q86XZ4 545 aaKnown RBP15.81■□□□□ 0.12
RTF1-201ENST00000389629 ZSCAN10Q96SZ4 725 aaPredicted RBP15.81■□□□□ 0.12
RTF1-201ENST00000389629 TNNI2P48788 182 aa15.8■□□□□ 0.12
RTF1-201ENST00000389629 FMR1Q06787 632 aaKnown RBP eCLIP15.8■□□□□ 0.121e-6■■■□□ 18.6
RTF1-201ENST00000389629 ACTN3Q08043 901 aaPredicted RBP15.8■□□□□ 0.12
RTF1-201ENST00000389629 GKAP1Q5VSY0 366 aaPredicted RBP15.8■□□□□ 0.12
RTF1-201ENST00000389629 RPS6KA1Q15418 735 aa15.8■□□□□ 0.12
RTF1-201ENST00000389629 CADPS2Q86UW7 1296 aa15.8■□□□□ 0.12
RTF1-201ENST00000389629 TCP11Q8WWU5 503 aa15.8■□□□□ 0.12
RTF1-201ENST00000389629 KRT12Q99456 494 aa15.8■□□□□ 0.12
RTF1-201ENST00000389629 FUT8Q9BYC5 575 aa15.8■□□□□ 0.12
RTF1-201ENST00000389629 MCAMP43121 646 aa15.8■□□□□ 0.12
RTF1-201ENST00000389629 MGARPQ8TDB4 240 aa15.8■□□□□ 0.12
RTF1-201ENST00000389629 CCDC170Q8IYT3 715 aa15.8■□□□□ 0.12
RTF1-201ENST00000389629 CRACR2BQ8N4Y2 399 aaPredicted RBP15.8■□□□□ 0.12
RTF1-201ENST00000389629 UHMK1Q8TAS1 419 aaKnown RBP15.8■□□□□ 0.12
RTF1-201ENST00000389629 KCNK3O14649 394 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 EPHB4P54760 987 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 GRIPAP1Q4V328 841 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 CABP7Q86V35 215 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 AATFQ9NY61 560 aaKnown RBP eCLIP15.79■□□□□ 0.12
RTF1-201ENST00000389629 AXIN2Q9Y2T1 843 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 USP17L12C9JPN9 530 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 USP17L21D6R901 530 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 HEXIM1O94992 359 aaKnown RBP15.79■□□□□ 0.12
RTF1-201ENST00000389629 ATP11AP98196 1134 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 SCARF1Q14162 830 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 REXO1L1PQ8IX06 675 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 FAM184BQ9ULE4 1060 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 ERBB3P21860 1342 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 SF3B2Q13435 895 aaKnown RBP15.79■□□□□ 0.12
RTF1-201ENST00000389629 DCAF17Q5H9S7 520 aaPredicted RBP15.79■□□□□ 0.12
RTF1-201ENST00000389629 ZSCAN29Q8IWY8 852 aaPredicted RBP15.79■□□□□ 0.12
RTF1-201ENST00000389629 OXER1Q8TDS5 423 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 STMN4Q9H169 189 aaPredicted RBP15.79■□□□□ 0.12
RTF1-201ENST00000389629 LRWD1Q9UFC0 647 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 LCMT1Q9UIC8 334 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 KIF20BQ96Q89 1820 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 LIFRP42702 1097 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 NEDD4P46934 1319 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 RASSF7Q02833 373 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 MROH5Q6ZUA9 1318 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 TUBGCP2Q9BSJ2 902 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 SLC24A3Q9HC58 644 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 TUBE1Q9UJT0 475 aa15.79■□□□□ 0.12
RTF1-201ENST00000389629 UTP11Q9Y3A2 253 aaKnown RBP15.79■□□□□ 0.12
RTF1-201ENST00000389629 CEP170BQ9Y4F5 1589 aaPredicted RBP15.79■□□□□ 0.12
RTF1-201ENST00000389629 UBN2Q6ZU65 1347 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms