RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ZNF777Q9ULD5 760 aaPredicted RBP1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 LRP12Q9Y561 859 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 COX11Q9Y6N1 276 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 FOXO3O43524 673 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 GSTP1P09211 210 aaKnown RBP1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 TNFRSF1BP20333 461 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 NTF4P34130 210 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZAP70P43403 619 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 RTP1P59025 263 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 CYP4F8P98187 520 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 HYAL1Q12794 435 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 SMAD4Q13485 552 aaKnown RBP1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 KIR3DS1Q14943 382 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 C9orf131Q5VYM1 1079 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 SCARA3Q6AZY7 606 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 LETMD1Q6P1Q0 360 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 RD3Q7Z3Z2 195 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 B3GNT8Q7Z7M8 397 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 MFSD2AQ8NA29 543 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 NFATC2IPQ8NCF5 419 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 IL17DQ8TAD2 202 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 TMEM255BQ8WV15 326 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 NOX5Q96PH1 765 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 GPR62Q9BZJ7 368 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 WWOXQ9NZC7 414 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 PLA2G2DQ9UNK4 145 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 CSADQ9Y600 493 aa1.06□□□□□ -2.24
RNU6-540P-201ENST00000384622 COL3A1P02461 1466 aaPredicted RBP1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 DNAJC9-AS1A6NH13 148 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 DKK1O94907 266 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 RPL10P27635 214 aaKnown RBP1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZNF81P51508 661 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 FAAP100Q0VG06 881 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 SPRED3Q2MJR0 410 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 KRTAP13-3Q3SY46 172 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 GALNT18Q6P9A2 607 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZC3H7AQ8IWR0 971 aaKnown RBP1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 KCNB2Q92953 911 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 MAP6Q96JE9 813 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 CHRDQ9H2X0 955 aa1.05□□□□□ -2.24
RNU6-540P-201ENST00000384622 EREGO14944 169 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 FANCGO15287 622 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 FOXS1O43638 330 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 SUSD5O60279 629 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 PRKCAP17252 672 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 RPL13P26373 211 aaKnown RBP1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 SOX11P35716 441 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 GRIA4P48058 902 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 IRF5Q13568 498 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 NBPF9Q3BBW0 867 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 TNFRSF12AQ9NP84 129 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 LATS2Q9NRM7 1088 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 FRMD4BQ9Y2L6 1034 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZNF281Q9Y2X9 895 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 HCFC2Q9Y5Z7 792 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 TAF6LQ9Y6J9 622 aa1.04□□□□□ -2.24
RNU6-540P-201ENST00000384622 WTIPA6NIX2 430 aaPredicted RBP1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 H3BNC9 293 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 GAS8-AS1O95177 125 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 ASGR2P07307 311 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 COMTP21964 271 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 ABCG1P45844 678 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 FAM26DQ5JW98 314 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZBTB37Q5TC79 503 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 AGBL4Q5VU57 503 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 WAPLQ7Z5K2 1190 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 C1QL2Q7Z5L3 287 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 CDH24Q86UP0 819 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 REXO1Q8N1G1 1221 aaKnown RBP1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 SMARCC2Q8TAQ2 1214 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZNF507Q8TCN5 953 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 NUDT16Q96DE0 195 aaKnown RBP1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 EAF1Q96JC9 268 aaPredicted RBP1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 HHIPL1Q96JK4 782 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 PACSIN3Q9UKS6 424 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 TBC1D2BQ9UPU7 963 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 SPATA31A6Q5VVP1 1343 aa1.03□□□□□ -2.24
RNU6-540P-201ENST00000384622 C9orf118A6NHY6 69 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 KIAA0355O15063 1070 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 B4GALT4O60513 344 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 WASP42768 502 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 FHL1Q13642 323 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 MBNL2Q5VZF2 373 aaKnown RBP1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 TCTN3Q6NUS6 607 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZNF517Q6ZMY9 492 aaPredicted RBP1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 C12orf40Q86WS4 652 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 CCNJLQ8IV13 435 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 ANKS1AQ92625 1134 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZNF778Q96MU6 729 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 C1QTNF7Q9BXJ2 289 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 MEGF9Q9H1U4 602 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 ZNF576Q9H609 170 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 RSAD1Q9HA92 442 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 PRM3Q9NNZ6 103 aa1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 MKRN1Q9UHC7 482 aaKnown RBP1.02□□□□□ -2.25
RNU6-540P-201ENST00000384622 NOTCH3Q9UM47 2321 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 DCDC2CA8MYV0 355 aa1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 DDX3XO00571 662 aaKnown RBP eCLIP1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 CYP1A1P04798 512 aaPredicted RBP1.01□□□□□ -2.25
RNU6-540P-201ENST00000384622 RPLP1P05386 114 aaKnown RBP1.01□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms