RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 F5H6K3 240 aa14.27□□□□□ -0.12
CIITA-202ENST00000381835 INPP5BP32019 993 aa14.27□□□□□ -0.12
CIITA-202ENST00000381835 KLRC3Q07444 240 aa14.27□□□□□ -0.12
CIITA-202ENST00000381835 PDE4CQ08493 712 aa14.27□□□□□ -0.12
CIITA-202ENST00000381835 ZNF543Q08ER8 600 aa14.27□□□□□ -0.12
CIITA-202ENST00000381835 KRT26Q7Z3Y9 468 aa14.27□□□□□ -0.12
CIITA-202ENST00000381835 C17orf53Q8N3J3 647 aaPredicted RBP14.27□□□□□ -0.12
CIITA-202ENST00000381835 FUCA2Q9BTY2 467 aa14.27□□□□□ -0.12
CIITA-202ENST00000381835 ZSCAN16Q9H4T2 348 aaPredicted RBP14.27□□□□□ -0.12
CIITA-202ENST00000381835 TAF1DQ9H5J8 278 aaPredicted RBP14.27□□□□□ -0.12
CIITA-202ENST00000381835 POTECB2RU33 542 aa14.27□□□□□ -0.13
CIITA-202ENST00000381835 CTNND1O60716 968 aaKnown RBP14.27□□□□□ -0.13
CIITA-202ENST00000381835 VEGFAP15692 232 aaPredicted RBP14.27□□□□□ -0.13
CIITA-202ENST00000381835 ZYXQ15942 572 aaKnown RBP14.27□□□□□ -0.13
CIITA-202ENST00000381835 SUPT20HL1Q3ZLR7 823 aa14.27□□□□□ -0.13
CIITA-202ENST00000381835 TTBK2Q6IQ55 1244 aa14.27□□□□□ -0.13
CIITA-202ENST00000381835 HOMER1Q86YM7 354 aa14.27□□□□□ -0.13
CIITA-202ENST00000381835 SPICE1Q8N0Z3 855 aa14.27□□□□□ -0.13
CIITA-202ENST00000381835 WRNIP1Q96S55 665 aa14.27□□□□□ -0.13
CIITA-202ENST00000381835 NDUFB10O96000 172 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 SCG2P13521 617 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 XBP1P17861 261 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 GNL2Q13823 731 aaKnown RBP14.26□□□□□ -0.13
CIITA-202ENST00000381835 GPATCH4Q5T3I0 446 aaKnown RBP14.26□□□□□ -0.13
CIITA-202ENST00000381835 SPZ1Q9BXG8 430 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 GLIS2Q9BZE0 524 aaPredicted RBP14.26□□□□□ -0.13
CIITA-202ENST00000381835 SLC16A2P36021 539 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 KIF23Q02241 960 aaPredicted RBP14.26□□□□□ -0.13
CIITA-202ENST00000381835 PFKFB3Q16875 520 aaPredicted RBP14.26□□□□□ -0.13
CIITA-202ENST00000381835 GMCL1P1Q8NEA9 526 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 DCAF4Q8WV16 495 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 GPKOWQ92917 476 aaPredicted RBP eCLIP14.26□□□□□ -0.13
CIITA-202ENST00000381835 ZKSCAN4Q969J2 545 aaPredicted RBP14.26□□□□□ -0.13
CIITA-202ENST00000381835 NUP88Q99567 741 aaPredicted RBP14.26□□□□□ -0.13
CIITA-202ENST00000381835 SPTLC3Q9NUV7 552 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 TMX2Q9Y320 296 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 MYH15Q9Y2K3 1946 aa14.26□□□□□ -0.13
CIITA-202ENST00000381835 SSC5DA1L4H1 1573 aa14.25□□□□□ -0.13
CIITA-202ENST00000381835 KIF28PB7ZC32 967 aa14.25□□□□□ -0.13
CIITA-202ENST00000381835 SHISA4Q96DD7 197 aa14.25□□□□□ -0.13
CIITA-202ENST00000381835 MMP1P03956 469 aa14.25□□□□□ -0.13
CIITA-202ENST00000381835 SAFBQ15424 915 aaKnown RBP eCLIP14.25□□□□□ -0.13
CIITA-202ENST00000381835 ZC3H15Q8WU90 426 aaKnown RBP14.25□□□□□ -0.13
CIITA-202ENST00000381835 RRP36Q96EU6 259 aaKnown RBP14.25□□□□□ -0.13
CIITA-202ENST00000381835 PIGSQ96S52 555 aa14.25□□□□□ -0.13
CIITA-202ENST00000381835 FEZ1Q99689 392 aa14.25□□□□□ -0.13
CIITA-202ENST00000381835 GOPCQ9HD26 462 aa14.25□□□□□ -0.13
CIITA-202ENST00000381835 TFIP11Q9UBB9 837 aaKnown RBP14.25□□□□□ -0.13
CIITA-202ENST00000381835 SEC63Q9UGP8 760 aaKnown RBP14.25□□□□□ -0.13
CIITA-202ENST00000381835 DOCK1Q14185 1865 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 WDR90Q96KV7 1748 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 TPM3P06753 285 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 CCDC192P0DO97 292 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 SMARCA1P28370 1054 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 HEATR3Q7Z4Q2 680 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 PNMA8AQ86V59 439 aaPredicted RBP14.24□□□□□ -0.13
CIITA-202ENST00000381835 ADGRF4Q8IZF3 695 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 RGS22Q8NE09 1264 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 KLRG1Q96E93 195 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 RIOX1Q9H6W3 641 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 ZNF112Q9UJU3 913 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 CLEC11AQ9Y240 323 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 DCAF8L1A6NGE4 600 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 BTBD18B2RXH4 712 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 AP5Z1O43299 807 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 GTF2F1P35269 517 aaKnown RBP eCLIP14.24□□□□□ -0.13
CIITA-202ENST00000381835 KRT85P78386 507 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 IKQ13123 557 aaPredicted RBP14.24□□□□□ -0.13
CIITA-202ENST00000381835 KIAA1755Q5JYT7 1200 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 DIS3L2Q8IYB7 885 aaKnown RBP14.24□□□□□ -0.13
CIITA-202ENST00000381835 TSC1Q92574 1164 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 GMCL1Q96IK5 515 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 CCDC94Q9BW85 323 aaPredicted RBP14.24□□□□□ -0.13
CIITA-202ENST00000381835 SYNPO2Q9UMS6 1093 aa14.24□□□□□ -0.13
CIITA-202ENST00000381835 GOLGA6L6A8MZA4 724 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 TMEM232C9JQI7 657 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 POTEIP0CG38 1075 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 POTEJP0CG39 1038 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 BMP3P12645 472 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 SCYL3Q8IZE3 742 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 PHF20Q9BVI0 1012 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 SH2D4AQ9H788 454 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 PICK1Q9NRD5 415 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 USP17L10C9JJH3 530 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 USP2O75604 605 aaPredicted RBP14.23□□□□□ -0.13
CIITA-202ENST00000381835 NLRP5P59047 1200 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 CEBPZQ03701 1054 aaKnown RBP14.23□□□□□ -0.13
CIITA-202ENST00000381835 WWC2Q6AWC2 1192 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 BRAPQ7Z569 592 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 SPC24Q8NBT2 197 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 OXER1Q8TDS5 423 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 VCPKMTQ9H867 229 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 JMJD4Q9H9V9 463 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 RRAGCQ9HB90 399 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 GINM1Q9NU53 330 aa14.23□□□□□ -0.13
CIITA-202ENST00000381835 NR5A1Q13285 461 aa14.22□□□□□ -0.13
CIITA-202ENST00000381835 FAM83BQ5T0W9 1011 aa14.22□□□□□ -0.13
CIITA-202ENST00000381835 KIAA1524Q8TCG1 905 aa14.22□□□□□ -0.13
CIITA-202ENST00000381835 CDCA5Q96FF9 252 aa14.22□□□□□ -0.13
CIITA-202ENST00000381835 PPP1R12BO60237 982 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms