RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CCZ1BP86790 482 aa24.52■■□□□ 1.52
TRIM54-202ENST00000380075 CCZ1P86791 482 aaPredicted RBP24.52■■□□□ 1.52
TRIM54-202ENST00000380075 GMLQ99445 158 aa24.52■■□□□ 1.52
TRIM54-202ENST00000380075 SLFN14P0C7P3 912 aa24.51■■□□□ 1.51
TRIM54-202ENST00000380075 C16orf86Q6ZW13 317 aa24.51■■□□□ 1.51
TRIM54-202ENST00000380075 DDX60LQ5H9U9 1706 aaKnown RBP24.51■■□□□ 1.51
TRIM54-202ENST00000380075 FOXN1O15353 648 aa24.51■■□□□ 1.51
TRIM54-202ENST00000380075 RASA1P20936 1047 aa24.51■■□□□ 1.51
TRIM54-202ENST00000380075 YY1P25490 414 aa24.51■■□□□ 1.51
TRIM54-202ENST00000380075 SCNN1DP51172 638 aa24.51■■□□□ 1.51
TRIM54-202ENST00000380075 TEX11Q8IYF3 940 aa24.51■■□□□ 1.51
TRIM54-202ENST00000380075 CCDC148Q8NFR7 591 aa24.51■■□□□ 1.51
TRIM54-202ENST00000380075 ENOX1Q8TC92 643 aaKnown RBP24.51■■□□□ 1.51
TRIM54-202ENST00000380075 SUGT1Q9Y2Z0 365 aa24.51■■□□□ 1.51
TRIM54-202ENST00000380075 SHTN1A0MZ66 631 aa24.5■■□□□ 1.51
TRIM54-202ENST00000380075 BMP6P22004 513 aa24.5■■□□□ 1.51
TRIM54-202ENST00000380075 KCNJ6P48051 423 aa24.5■■□□□ 1.51
TRIM54-202ENST00000380075 TMC6Q7Z403 805 aa24.5■■□□□ 1.51
TRIM54-202ENST00000380075 KIAA0825Q8IV33 1275 aa24.5■■□□□ 1.51
TRIM54-202ENST00000380075 MAPKAPK5Q8IW41 473 aa24.5■■□□□ 1.51
TRIM54-202ENST00000380075 BLIDQ8IZY5 108 aa24.5■■□□□ 1.51
TRIM54-202ENST00000380075 AGBL3Q8NEM8 1001 aa24.5■■□□□ 1.51
TRIM54-202ENST00000380075 MAD2L2Q9UI95 211 aa24.5■■□□□ 1.51
TRIM54-202ENST00000380075 F8W031 263 aaPredicted RBP24.49■■□□□ 1.51
TRIM54-202ENST00000380075 SERPINC1P01008 464 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 PLCD1P51178 756 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 UBASH3AP57075 661 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 FKBP1AP62942 108 aaKnown RBP24.49■■□□□ 1.51
TRIM54-202ENST00000380075 ZNF174Q15697 407 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 ARL6IP4Q66PJ3 421 aaKnown RBP24.49■■□□□ 1.51
TRIM54-202ENST00000380075 SH3RF1Q7Z6J0 888 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 SYMPKQ92797 1274 aaKnown RBP24.49■■□□□ 1.51
TRIM54-202ENST00000380075 PCDHA4Q9UN74 947 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 PRR29P0C7W0 189 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 RPS12P25398 132 aaKnown RBP24.49■■□□□ 1.51
TRIM54-202ENST00000380075 PTGDRQ13258 359 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 ARID5BQ14865 1188 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 TPD52L1Q16890 204 aaPredicted RBP24.49■■□□□ 1.51
TRIM54-202ENST00000380075 PIK3AP1Q6ZUJ8 805 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 PDILTQ8N807 584 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 DAGLBQ8NCG7 672 aa24.49■■□□□ 1.51
TRIM54-202ENST00000380075 L3MBTL3Q96JM7 780 aaPredicted RBP24.49■■□□□ 1.51
TRIM54-202ENST00000380075 MYO3BQ8WXR4 1341 aa24.48■■□□□ 1.51
TRIM54-202ENST00000380075 SFPQP23246 707 aaKnown RBP eCLIP24.48■■□□□ 1.51
TRIM54-202ENST00000380075 ERCC5P28715 1186 aaPredicted RBP24.48■■□□□ 1.51
TRIM54-202ENST00000380075 SLC4A8Q2Y0W8 1093 aa24.48■■□□□ 1.51
TRIM54-202ENST00000380075 USP49Q70CQ1 688 aa24.48■■□□□ 1.51
TRIM54-202ENST00000380075 DPF2Q92785 391 aa24.48■■□□□ 1.51
TRIM54-202ENST00000380075 FLT1P17948 1338 aa24.48■■□□□ 1.51
TRIM54-202ENST00000380075 PALM3A6NDB9 673 aaPredicted RBP24.47■■□□□ 1.51
TRIM54-202ENST00000380075 POTECB2RU33 542 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 ATP1A3P13637 1013 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 EPS15P42566 896 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 CDK8P49336 464 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 RHBDL3P58872 404 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 NEDD1Q8NHV4 660 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 DHX58Q96C10 678 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 MAP7D2Q96T17 732 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 GPRC5DQ9NZD1 345 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 CNOT7Q9UIV1 285 aaKnown RBP24.47■■□□□ 1.51
TRIM54-202ENST00000380075 ZNF646O15015 1829 aaPredicted RBP24.47■■□□□ 1.51
TRIM54-202ENST00000380075 PSME4Q14997 1843 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 MTERF4Q7Z6M4 381 aaKnown RBP24.47■■□□□ 1.51
TRIM54-202ENST00000380075 MICALL2Q8IY33 904 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 EPSTI1Q96J88 318 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 GSDMAQ96QA5 445 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 TMEM47Q9BQJ4 181 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 SAP30BPQ9UHR5 308 aaKnown RBP24.47■■□□□ 1.51
TRIM54-202ENST00000380075 PAXBP1Q9Y5B6 917 aa24.47■■□□□ 1.51
TRIM54-202ENST00000380075 TNNT1P13805 278 aa24.46■■□□□ 1.51
TRIM54-202ENST00000380075 STAG2Q8N3U4 1231 aa24.46■■□□□ 1.51
TRIM54-202ENST00000380075 FANCLQ9NW38 375 aa24.46■■□□□ 1.51
TRIM54-202ENST00000380075 CDK5RAP2Q96SN8 1893 aa24.46■■□□□ 1.51
TRIM54-202ENST00000380075 WNT7AO00755 349 aa24.45■■□□□ 1.51
TRIM54-202ENST00000380075 SMARCA1P28370 1054 aa24.45■■□□□ 1.51
TRIM54-202ENST00000380075 PAGE5Q96GU1 130 aa24.45■■□□□ 1.51
TRIM54-202ENST00000380075 C16orf45Q96MC5 204 aaPredicted RBP24.45■■□□□ 1.51
TRIM54-202ENST00000380075 SPZ1Q9BXG8 430 aa24.45■■□□□ 1.51
TRIM54-202ENST00000380075 RRAGCQ9HB90 399 aa24.45■■□□□ 1.51
TRIM54-202ENST00000380075 VWA3AA6NCI4 1184 aa24.45■■□□□ 1.5
TRIM54-202ENST00000380075 CFAP100Q494V2 611 aa24.45■■□□□ 1.5
TRIM54-202ENST00000380075 IQUBQ8NA54 791 aa24.45■■□□□ 1.5
TRIM54-202ENST00000380075 SLC44A5Q8NCS7 719 aa24.45■■□□□ 1.5
TRIM54-202ENST00000380075 CCDC112Q8NEF3 446 aa24.45■■□□□ 1.5
TRIM54-202ENST00000380075 NMRK2Q9NPI5 230 aa24.45■■□□□ 1.5
TRIM54-202ENST00000380075 STX8Q9UNK0 236 aa24.45■■□□□ 1.5
TRIM54-202ENST00000380075 TTF2Q9UNY4 1162 aaKnown RBP24.45■■□□□ 1.5
TRIM54-202ENST00000380075 A0A087X0B3 334 aa24.44■■□□□ 1.5
TRIM54-202ENST00000380075 M0R2N6 131 aa24.44■■□□□ 1.5
TRIM54-202ENST00000380075 KIF2AO00139 706 aaPredicted RBP24.44■■□□□ 1.5
TRIM54-202ENST00000380075 LONP1P36776 959 aaKnown RBP24.44■■□□□ 1.5
TRIM54-202ENST00000380075 NOM1Q5C9Z4 860 aaKnown RBP24.44■■□□□ 1.5
TRIM54-202ENST00000380075 ARMCX5Q6P1M9 558 aa24.44■■□□□ 1.5
TRIM54-202ENST00000380075 BARHL2Q9NY43 387 aa24.44■■□□□ 1.5
TRIM54-202ENST00000380075 ZNF18P17022 549 aa24.43■■□□□ 1.5
TRIM54-202ENST00000380075 NOVP48745 357 aa24.43■■□□□ 1.5
TRIM54-202ENST00000380075 VSTM4Q8IW00 320 aa24.43■■□□□ 1.5
TRIM54-202ENST00000380075 CCDC12Q8WUD4 166 aaPredicted RBP24.43■■□□□ 1.5
TRIM54-202ENST00000380075 HACL1Q9UJ83 578 aa24.43■■□□□ 1.5
TRIM54-202ENST00000380075 HSP90AA2PQ14568 343 aaPredicted RBP24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms