RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 A0A0U1RQJ8 604 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 SLURP2P0DP57 97 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 ATRIPQ8WXE1 791 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 ADRA2BP18089 450 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 ATP2B4P23634 1241 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 CEP95Q96GE4 821 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 PLIN2Q99541 437 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 L2HGDHQ9H9P8 463 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 ADD3Q9UEY8 706 aaKnown RBP15.18■□□□□ 0.02
CCDC3-202ENST00000378839 GDAQ9Y2T3 454 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 KLRF2D3W0D1 207 aa15.17■□□□□ 0.02
CCDC3-202ENST00000378839 SYCP1Q15431 976 aa15.17■□□□□ 0.02
CCDC3-202ENST00000378839 CLEC10AQ8IUN9 316 aa15.17■□□□□ 0.02
CCDC3-202ENST00000378839 NOL10Q9BSC4 688 aaKnown RBP15.17■□□□□ 0.02
CCDC3-202ENST00000378839 MAPK8IP1Q9UQF2 711 aa15.17■□□□□ 0.02
CCDC3-202ENST00000378839 IQUBQ8NA54 791 aa15.17■□□□□ 0.02
CCDC3-202ENST00000378839 RBM17Q96I25 401 aaKnown RBP15.17■□□□□ 0.02
CCDC3-202ENST00000378839 BAG1Q99933 345 aaPredicted RBP15.17■□□□□ 0.02
CCDC3-202ENST00000378839 RNF225M0QZC1 329 aaPredicted RBP15.16■□□□□ 0.02
CCDC3-202ENST00000378839 CALML3P27482 149 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 HOXA10P31260 410 aaPredicted RBP15.16■□□□□ 0.02
CCDC3-202ENST00000378839 CERS5Q8N5B7 392 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 PPP2R2CQ9Y2T4 447 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 GAKO14976 1311 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 LDHCP07864 332 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 ARL6IP4Q66PJ3 421 aaKnown RBP15.16■□□□□ 0.02
CCDC3-202ENST00000378839 DAGLBQ8NCG7 672 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 NEDD1Q8NHV4 660 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 DESI2Q9BSY9 194 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 DAGLAQ9Y4D2 1042 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 USP17L5A8MUK1 530 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 RIMBP2O15034 1052 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 ST5P78524 1137 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 RBL2Q08999 1139 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 FAM163AQ96GL9 167 aaPredicted RBP15.16■□□□□ 0.02
CCDC3-202ENST00000378839 DDX4Q9NQI0 724 aaKnown RBP15.16■□□□□ 0.02
CCDC3-202ENST00000378839 DNAI1Q9UI46 699 aa15.16■□□□□ 0.02
CCDC3-202ENST00000378839 KLRG2A4D1S0 409 aaPredicted RBP15.15■□□□□ 0.02
CCDC3-202ENST00000378839 EDIL3O43854 480 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 PMS1P54277 932 aaKnown RBP15.15■□□□□ 0.02
CCDC3-202ENST00000378839 ETF1P62495 437 aaKnown RBP15.15■□□□□ 0.02
CCDC3-202ENST00000378839 ELF2Q15723 593 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 HOMER1Q86YM7 354 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 UBA5Q9GZZ9 404 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 ADAMTSL1Q8N6G6 1762 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 MYH1P12882 1939 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 VGLL3A8MV65 326 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 GTPBP6O43824 516 aaPredicted RBP15.15■□□□□ 0.02
CCDC3-202ENST00000378839 TRIM37O94972 964 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 LONP1P36776 959 aaKnown RBP15.15■□□□□ 0.02
CCDC3-202ENST00000378839 NOVP48745 357 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 GTF2IP78347 998 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 RRAGBQ5VZM2 374 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 VAT1LQ9HCJ6 419 aa15.15■□□□□ 0.02
CCDC3-202ENST00000378839 SOWAHDA6NJG2 315 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 F8W031 263 aaPredicted RBP15.14■□□□□ 0.01
CCDC3-202ENST00000378839 C6orf229H3BNL8 230 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 ARHGAP6O43182 974 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 BBOX1O75936 387 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 RPN1P04843 607 aaKnown RBP15.14■□□□□ 0.01
CCDC3-202ENST00000378839 CPLX3Q8WVH0 158 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 WDR24Q96S15 920 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 ZMYND12Q9H0C1 365 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 DISC1Q9NRI5 854 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 CCDC194A0A1B0GVG4 234 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 KLRC4O43908 158 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 CCT6AP40227 531 aaKnown RBP15.14■□□□□ 0.01
CCDC3-202ENST00000378839 PRCPP42785 496 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 KMT5BQ4FZB7 885 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 BBXQ8WY36 941 aaPredicted RBP15.14■□□□□ 0.01
CCDC3-202ENST00000378839 PIGSQ96S52 555 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 LRRC37AA6NMS7 1700 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 ANKRD31Q8N7Z5 1873 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 FRMPD2Q68DX3 1309 aaPredicted RBP15.14■□□□□ 0.01
CCDC3-202ENST00000378839 TRIM49BA6NDI0 452 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 SLU7O95391 586 aaKnown RBP15.14■□□□□ 0.01
CCDC3-202ENST00000378839 GNAQP50148 359 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 KRT31Q15323 416 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 RAD9BQ6WBX8 426 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 IRF2BP1Q8IU81 584 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 FAM177A1Q8N128 213 aaPredicted RBP15.14■□□□□ 0.01
CCDC3-202ENST00000378839 SPZ1Q9BXG8 430 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 MRPL44Q9H9J2 332 aaKnown RBP15.14■□□□□ 0.01
CCDC3-202ENST00000378839 TMEM260Q9NX78 707 aa15.14■□□□□ 0.01
CCDC3-202ENST00000378839 PICALMQ13492 652 aa15.13■□□□□ 0.01
CCDC3-202ENST00000378839 CT47A1Q5JQC4 288 aaPredicted RBP15.13■□□□□ 0.01
CCDC3-202ENST00000378839 AMOTL1Q8IY63 956 aa15.13■□□□□ 0.01
CCDC3-202ENST00000378839 FOCADQ5VW36 1801 aa15.13■□□□□ 0.01
CCDC3-202ENST00000378839 STX10O60499 249 aa15.13■□□□□ 0.01
CCDC3-202ENST00000378839 FXR1P51114 621 aaKnown RBP eCLIP15.13■□□□□ 0.01
CCDC3-202ENST00000378839 IRX2Q9BZI1 471 aaPredicted RBP15.13■□□□□ 0.01
CCDC3-202ENST00000378839 RGS17Q9UGC6 210 aaPredicted RBP15.13■□□□□ 0.01
CCDC3-202ENST00000378839 KIF2AO00139 706 aaPredicted RBP15.12■□□□□ 0.01
CCDC3-202ENST00000378839 GYPCP04921 128 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 PARP1P09874 1014 aaKnown RBP15.12■□□□□ 0.01
CCDC3-202ENST00000378839 STAT6P42226 847 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 EIF6P56537 245 aaKnown RBP15.12■□□□□ 0.01
CCDC3-202ENST00000378839 GABPAQ06546 454 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 DHX8Q14562 1220 aaKnown RBP15.12■□□□□ 0.01
CCDC3-202ENST00000378839 ZNF658Q5TYW1 1059 aaPredicted RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms