RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 ZIM3Q96PE6 472 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 NACAP1Q9BZK3 213 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 VIPAS39Q9H9C1 493 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 SLC4A7Q9Y6M7 1214 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 CARMIL3Q8ND23 1372 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 ALDH3A1P30838 453 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 RTN1Q16799 776 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 OTUD6AQ7L8S5 288 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 MYCBPAPQ8TBZ2 947 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 ENOX1Q8TC92 643 aaKnown RBP13□□□□□ -0.33
PTPN1-201ENST00000371621 TEKT4Q8WW24 435 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 POLR3EQ9NVU0 708 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 DLGAP2Q9P1A6 1054 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 DDX20Q9UHI6 824 aaKnown RBP13□□□□□ -0.33
PTPN1-201ENST00000371621 SLC4A4Q9Y6R1 1079 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 MSH2P43246 934 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 RAD23BP54727 409 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 DHX9Q08211 1270 aaKnown RBP13□□□□□ -0.33
PTPN1-201ENST00000371621 EZH2Q15910 746 aaKnown RBP13□□□□□ -0.33
PTPN1-201ENST00000371621 FBXO31Q5XUX0 539 aaPredicted RBP13□□□□□ -0.33
PTPN1-201ENST00000371621 HOOK3Q86VS8 718 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 CCDC26Q8TAB7 109 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 RAPGEF4Q8WZA2 1011 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 EHD2Q9NZN4 543 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 DMGDHQ9UI17 866 aaKnown RBP13□□□□□ -0.33
PTPN1-201ENST00000371621 ABCC1P33527 1531 aa13□□□□□ -0.33
PTPN1-201ENST00000371621 STX2P32856 288 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 PAPOLAP51003 745 aaKnown RBP12.99□□□□□ -0.33
PTPN1-201ENST00000371621 FMR1Q06787 632 aaKnown RBP eCLIP12.99□□□□□ -0.33
PTPN1-201ENST00000371621 RPS6KA1Q15418 735 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 NUGGCQ68CJ6 796 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 KRT26Q7Z3Y9 468 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 VCX3BQ9H321 246 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 VCX3AQ9NNX9 186 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 UGGT1Q9NYU2 1555 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 MAST1Q9Y2H9 1570 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 B4DLN1 442 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 CHGBP05060 677 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 SEPT6Q14141 434 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 NBPF20Q3BBV1 942 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 PREPLQ4J6C6 727 aaPredicted RBP12.99□□□□□ -0.33
PTPN1-201ENST00000371621 DENND2CQ68D51 928 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 ARMCX6Q7L4S7 300 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 SEC16BQ96JE7 1060 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 ATG3Q9NT62 314 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 TRPC6Q9Y210 931 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 TTC21BQ7Z4L5 1316 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 PDE4BQ07343 736 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 HHATQ5VTY9 493 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 VCPKMTQ9H867 229 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 ABHD10Q9NUJ1 306 aa12.99□□□□□ -0.33
PTPN1-201ENST00000371621 CCDC194A0A1B0GVG4 234 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 HMGB1P1B2RPK0 211 aaPredicted RBP12.98□□□□□ -0.33
PTPN1-201ENST00000371621 SUN1O94901 812 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 MMEP08473 750 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 USP4Q13107 963 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.98□□□□□ -0.33
PTPN1-201ENST00000371621 RILPL1Q5EBL4 403 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 DZIP1Q86YF9 867 aaKnown RBP12.98□□□□□ -0.33
PTPN1-201ENST00000371621 GDAP1Q8TB36 358 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 TBC1D22AQ8WUA7 517 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 FGD4Q96M96 766 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 MLXIPQ9HAP2 919 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 ATP7AQ04656 1500 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 KRIT1O00522 736 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 LRRC14Q15048 493 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 LMBR1LQ6UX01 489 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 SCYL3Q8IZE3 742 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 MSANTD4Q8NCY6 345 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 ATP6V1G3Q96LB4 118 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 AP1M1Q9BXS5 423 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 ATP2A2P16615 1042 aaKnown RBP12.98□□□□□ -0.33
PTPN1-201ENST00000371621 SPATA4Q8NEY3 305 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 CEP70Q8NHQ1 597 aa12.98□□□□□ -0.33
PTPN1-201ENST00000371621 SYF2O95926 243 aaKnown RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 TMEM154Q6P9G4 183 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 FUKQ8N0W3 1084 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 HOOK2Q96ED9 719 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 NLRP3Q96P20 1036 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 MTRF1LQ9UGC7 380 aaKnown RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 KIF24Q5T7B8 1368 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 ERVK-7P63135 1459 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 WTAPQ15007 396 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 KRT31Q15323 416 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 PTGISQ16647 500 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 SLC9C1Q4G0N8 1177 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 PSMD1Q99460 953 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 STMN4Q9H169 189 aaPredicted RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 ETNK1Q9HBU6 452 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 BMP2KQ9NSY1 1161 aaPredicted RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 TCP11L1Q9NUJ3 509 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 UHRF1BP1LA0JNW5 1464 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 FAM107AO95990 144 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 DESP17661 470 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 RFC1P35251 1148 aaPredicted RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 CARSP49589 748 aaKnown RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 GSCP56915 257 aaPredicted RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 KIF23Q02241 960 aaPredicted RBP12.97□□□□□ -0.33
PTPN1-201ENST00000371621 KCNV1Q6PIU1 500 aa12.97□□□□□ -0.33
PTPN1-201ENST00000371621 MDM1Q8TC05 714 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms