RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 IKQ13123 557 aaPredicted RBP22.97■■□□□ 1.27
CLN3-205ENST00000359984 GPKOWQ92917 476 aaPredicted RBP eCLIP22.97■■□□□ 1.27
CLN3-205ENST00000359984 GPBP1L1Q9HC44 474 aaPredicted RBP22.97■■□□□ 1.27
CLN3-205ENST00000359984 SEC63Q9UGP8 760 aaKnown RBP22.97■■□□□ 1.27
CLN3-205ENST00000359984 C19orf81C9J6K1 198 aa22.96■■□□□ 1.27
CLN3-205ENST00000359984 XBP1P17861 261 aa22.96■■□□□ 1.27
CLN3-205ENST00000359984 STAT2P52630 851 aa22.96■■□□□ 1.27
CLN3-205ENST00000359984 RESTQ13127 1097 aa22.96■■□□□ 1.27
CLN3-205ENST00000359984 SYDE2Q5VT97 1194 aa22.96■■□□□ 1.27
CLN3-205ENST00000359984 MCTP1Q6DN14 999 aa22.96■■□□□ 1.27
CLN3-205ENST00000359984 WDR46O15213 610 aaKnown RBP22.96■■□□□ 1.27
CLN3-205ENST00000359984 CELF2O95319 508 aaKnown RBP22.96■■□□□ 1.27
CLN3-205ENST00000359984 WWC2Q6AWC2 1192 aa22.96■■□□□ 1.27
CLN3-205ENST00000359984 ERO1BQ86YB8 467 aa22.96■■□□□ 1.27
CLN3-205ENST00000359984 PLA2G6O60733 806 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 MMP1P03956 469 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 VCAM1P19320 739 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 HMGCS2P54868 508 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 PPATQ06203 517 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 HEATR3Q7Z4Q2 680 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 CHURC1Q8WUH1 139 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 C12orf42Q96LP6 360 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 PHF20Q9BVI0 1012 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 GBA2Q9HCG7 927 aaPredicted RBP22.95■■□□□ 1.26
CLN3-205ENST00000359984 FEM1BQ9UK73 627 aa22.95■■□□□ 1.26
CLN3-205ENST00000359984 PNMA6FA0A0J9YX94 578 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 SPDYE5A6NIY4 337 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 FKBP1BP68106 108 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 FOXD4L6Q3SYB3 417 aaPredicted RBP22.94■■□□□ 1.26
CLN3-205ENST00000359984 FOXD4L3Q6VB84 417 aaPredicted RBP22.94■■□□□ 1.26
CLN3-205ENST00000359984 OTUD5Q96G74 571 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 CHAMP1Q96JM3 812 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 SH3GLB2Q9NR46 395 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 BARHL2Q9NY43 387 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 PRR12Q9ULL5 1215 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 UNCXA6NJT0 531 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 STXBP3O00186 592 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 ZBTB5O15062 677 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 KIF23Q02241 960 aaPredicted RBP22.94■■□□□ 1.26
CLN3-205ENST00000359984 TYW1BQ6NUM6 668 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 CLEC17AQ6ZS10 378 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 FAM160B2Q86V87 743 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 RBM46Q8TBY0 533 aaKnown RBP22.94■■□□□ 1.26
CLN3-205ENST00000359984 ZSCAN16Q9H4T2 348 aaPredicted RBP22.94■■□□□ 1.26
CLN3-205ENST00000359984 FBXO28Q9NVF7 368 aa22.94■■□□□ 1.26
CLN3-205ENST00000359984 SNAP25P60880 206 aa22.93■■□□□ 1.26
CLN3-205ENST00000359984 SH3D19Q5HYK7 790 aa22.93■■□□□ 1.26
CLN3-205ENST00000359984 CST9Q5W186 159 aa22.93■■□□□ 1.26
CLN3-205ENST00000359984 KIF28PB7ZC32 967 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 IRF6O14896 467 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 PPP1R11O60927 126 aaPredicted RBP22.92■■□□□ 1.26
CLN3-205ENST00000359984 BAG4O95429 457 aaKnown RBP22.92■■□□□ 1.26
CLN3-205ENST00000359984 NFKBIBQ15653 356 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 CDC37Q16543 378 aaPredicted RBP22.92■■□□□ 1.26
CLN3-205ENST00000359984 QRICH1Q2TAL8 776 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 FAM173BQ6P4H8 233 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 C2orf69Q8N8R5 385 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 RPAP3Q9H6T3 665 aaPredicted RBP22.92■■□□□ 1.26
CLN3-205ENST00000359984 ATP6V1DQ9Y5K8 247 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 KIF3CO14782 793 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 SAFBQ15424 915 aaKnown RBP eCLIP22.92■■□□□ 1.26
CLN3-205ENST00000359984 NPY5RQ15761 445 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 KIFC2Q96AC6 838 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 OPTNQ96CV9 577 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 SLC10A4Q96EP9 437 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 TMOD4Q9NZQ9 345 aa22.92■■□□□ 1.26
CLN3-205ENST00000359984 NLRP5P59047 1200 aa22.91■■□□□ 1.26
CLN3-205ENST00000359984 PPIL2Q13356 520 aa22.91■■□□□ 1.26
CLN3-205ENST00000359984 DIS3L2Q8IYB7 885 aaKnown RBP22.91■■□□□ 1.26
CLN3-205ENST00000359984 COA7Q96BR5 231 aa22.91■■□□□ 1.26
CLN3-205ENST00000359984 TANGO6Q9C0B7 1094 aa22.91■■□□□ 1.26
CLN3-205ENST00000359984 BTBD18B2RXH4 712 aa22.9■■□□□ 1.26
CLN3-205ENST00000359984 hCG_1984214I3L0E3 225 aa22.9■■□□□ 1.26
CLN3-205ENST00000359984 ZNF713Q8N859 430 aaPredicted RBP22.9■■□□□ 1.26
CLN3-205ENST00000359984 OXER1Q8TDS5 423 aa22.9■■□□□ 1.26
CLN3-205ENST00000359984 GBP4Q96PP9 640 aa22.9■■□□□ 1.26
CLN3-205ENST00000359984 KCNH4Q9UQ05 1017 aa22.9■■□□□ 1.26
CLN3-205ENST00000359984 CXCL11O14625 94 aa22.9■■□□□ 1.26
CLN3-205ENST00000359984 U2AF2P26368 475 aaKnown RBP eCLIP22.9■■□□□ 1.26
CLN3-205ENST00000359984 NAPAP54920 295 aa22.9■■□□□ 1.26
CLN3-205ENST00000359984 SAMD1Q6SPF0 538 aaPredicted RBP22.9■■□□□ 1.26
CLN3-205ENST00000359984 FAM177A1Q8N128 213 aaPredicted RBP22.9■■□□□ 1.26
CLN3-205ENST00000359984 SLF1Q9BQI6 1058 aa22.9■■□□□ 1.26
CLN3-205ENST00000359984 GJA5P36382 358 aa22.89■■□□□ 1.25
CLN3-205ENST00000359984 PRPF38AQ8NAV1 312 aaKnown RBP22.89■■□□□ 1.25
CLN3-205ENST00000359984 CCDC148Q8NFR7 591 aa22.89■■□□□ 1.25
CLN3-205ENST00000359984 FOXP1Q9H334 677 aaPredicted RBP22.89■■□□□ 1.25
CLN3-205ENST00000359984 A0A0G2JLL6 359 aaPredicted RBP22.88■■□□□ 1.25
CLN3-205ENST00000359984 FLOT1O75955 427 aa22.88■■□□□ 1.25
CLN3-205ENST00000359984 CALML3P27482 149 aa22.88■■□□□ 1.25
CLN3-205ENST00000359984 KRT2P35908 639 aa22.88■■□□□ 1.25
CLN3-205ENST00000359984 DNM1Q05193 864 aaKnown RBP22.88■■□□□ 1.25
CLN3-205ENST00000359984 NR5A1Q13285 461 aa22.88■■□□□ 1.25
CLN3-205ENST00000359984 GNL2Q13823 731 aaKnown RBP22.88■■□□□ 1.25
CLN3-205ENST00000359984 BRAPQ7Z569 592 aa22.88■■□□□ 1.25
CLN3-205ENST00000359984 PRRT2Q7Z6L0 340 aaPredicted RBP22.88■■□□□ 1.25
CLN3-205ENST00000359984 RANBP17Q9H2T7 1088 aaKnown RBP22.88■■□□□ 1.25
CLN3-205ENST00000359984 ADAMTS3O15072 1205 aa22.88■■□□□ 1.25
CLN3-205ENST00000359984 CCDC12Q8WUD4 166 aaPredicted RBP22.88■■□□□ 1.25
CLN3-205ENST00000359984 ZMYND12Q9H0C1 365 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms