RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 GSDMAQ96QA5 445 aa16.32■□□□□ 0.2
CHD4-201ENST00000357008 LUC7L3O95232 432 aaKnown RBP16.31■□□□□ 0.2
CHD4-201ENST00000357008 GUCY2DQ02846 1103 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 SLC35F6Q8N357 371 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 RSAD2Q8WXG1 361 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 TRIM37O94972 964 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 CASP14P31944 242 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 RRP15Q9Y3B9 282 aaKnown RBP16.31■□□□□ 0.2
CHD4-201ENST00000357008 KDRP35968 1356 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 CLTAP09496 248 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 OR52Z1P0C646 297 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 POLR2FP61218 127 aaKnown RBP16.31■□□□□ 0.2
CHD4-201ENST00000357008 SCRN1Q12765 414 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 PPP2R5DQ14738 602 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 SLC39A14Q15043 492 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 PPP4R1Q8TF05 950 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 METTL14Q9HCE5 456 aaKnown RBP16.31■□□□□ 0.2
CHD4-201ENST00000357008 PPP6R2O75170 966 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 IFNB1P01574 187 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 SETSIPP0DME0 302 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 MYCLP12524 364 aaPredicted RBP16.31■□□□□ 0.2
CHD4-201ENST00000357008 LONP1P36776 959 aaKnown RBP16.31■□□□□ 0.2
CHD4-201ENST00000357008 TRIM68Q6AZZ1 485 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 STAG1Q8WVM7 1258 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 CHAMP1Q96JM3 812 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 OSBPL3Q9H4L5 887 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 VCX3AQ9NNX9 186 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 FAN1Q9Y2M0 1017 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 ABCC10Q5T3U5 1492 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 N4BP1O75113 896 aaKnown RBP16.31■□□□□ 0.2
CHD4-201ENST00000357008 CA8P35219 290 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 TAF12Q16514 161 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 RDH13Q8NBN7 331 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 CACTINQ8WUQ7 758 aaKnown RBP16.31■□□□□ 0.2
CHD4-201ENST00000357008 RAB20Q9NX57 234 aa16.31■□□□□ 0.2
CHD4-201ENST00000357008 ARHGAP42A6NI28 874 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 THAP12O43422 761 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 TECP42680 631 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 TRAPPC3LQ5T215 181 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 MCTP2Q6DN12 878 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 CCDC125Q86Z20 511 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 EFCAB13Q8IY85 973 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 BBOF1Q8ND07 529 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 GNPATO15228 680 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 YWHAEP62258 255 aaKnown RBP16.3■□□□□ 0.2
CHD4-201ENST00000357008 CUL4AQ13619 759 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 MAPKAPK5Q8IW41 473 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 TPH2Q8IWU9 490 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 SEC31AO94979 1220 aaKnown RBP16.3■□□□□ 0.2
CHD4-201ENST00000357008 SCG2P13521 617 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 USH1GQ495M9 461 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 ZNF496Q96IT1 587 aaPredicted RBP16.3■□□□□ 0.2
CHD4-201ENST00000357008 MAGEF1Q9HAY2 307 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 TFCP2L1Q9NZI6 479 aa16.3■□□□□ 0.2
CHD4-201ENST00000357008 CFBP00751 764 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 FGAP02671 866 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 TNNI1P19237 187 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 CMTR1Q8N1G2 835 aaKnown RBP16.29■□□□□ 0.2
CHD4-201ENST00000357008 SYMPKQ92797 1274 aaKnown RBP16.29■□□□□ 0.2
CHD4-201ENST00000357008 TBX22Q9Y458 520 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 USP17L12C9JPN9 530 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 USP17L21D6R901 530 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 SUN1O94901 812 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 EPHB4P54760 987 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 NEK8Q86SG6 692 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 RUNDC3BQ96NL0 473 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 PANK4Q9NVE7 773 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 CYP2J2P51589 502 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 TGFBRAP1Q8WUH2 860 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 POLR3EQ9NVU0 708 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 PCDHA12Q9UN75 941 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 RABGAP1Q9Y3P9 1069 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 TNKSO95271 1327 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 SLC12A2P55011 1212 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 CCDC151A5D8V7 595 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 MAN1A1P33908 653 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 UIMC1Q96RL1 719 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 ASXL2Q76L83 1435 aa16.29■□□□□ 0.2
CHD4-201ENST00000357008 RASEFQ8IZ41 740 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 CCDC197Q8NCU1 140 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 Q9H521 79 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 BZW2Q9Y6E2 419 aaKnown RBP16.28■□□□□ 0.2
CHD4-201ENST00000357008 KCNA6P17658 529 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 PASKQ96RG2 1323 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 MED23Q9ULK4 1368 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 GAS7O60861 476 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 PDE6AP16499 860 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 EHHADHQ08426 723 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 PTGDRQ13258 359 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 KCTD16Q68DU8 428 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 TUBGCP2Q9BSJ2 902 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 ANTXR1Q9H6X2 564 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 EEF1GP26641 437 aaKnown RBP16.28■□□□□ 0.2
CHD4-201ENST00000357008 TCIRG1Q13488 830 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 TRMT2AQ8IZ69 625 aaKnown RBP16.28■□□□□ 0.2
CHD4-201ENST00000357008 RETREG2Q8NC44 543 aa16.28■□□□□ 0.2
CHD4-201ENST00000357008 DDAH1O94760 285 aa16.27■□□□□ 0.2
CHD4-201ENST00000357008 ADAM9Q13443 819 aa16.27■□□□□ 0.2
CHD4-201ENST00000357008 DPCR1Q3MIW9 517 aa16.27■□□□□ 0.2
CHD4-201ENST00000357008 ADCK5Q3MIX3 580 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms