RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 MCCP23508 829 aa21.74■■□□□ 1.07
CLN3-202ENST00000355477 MNX1P50219 401 aaPredicted RBP21.74■■□□□ 1.07
CLN3-202ENST00000355477 AKNAD1Q5T1N1 836 aa21.74■■□□□ 1.07
CLN3-202ENST00000355477 LHX8Q68G74 356 aa21.74■■□□□ 1.07
CLN3-202ENST00000355477 RASGRP2Q7LDG7 609 aa21.74■■□□□ 1.07
CLN3-202ENST00000355477 GMCL1Q96IK5 515 aa21.74■■□□□ 1.07
CLN3-202ENST00000355477 PAWRQ96IZ0 340 aaKnown RBP21.74■■□□□ 1.07
CLN3-202ENST00000355477 OGDHLQ9ULD0 1010 aa21.74■■□□□ 1.07
CLN3-202ENST00000355477 RIPK3Q9Y572 518 aa21.74■■□□□ 1.07
CLN3-202ENST00000355477 TMEM232C9JQI7 657 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 PPP4R3BQ5MIZ7 849 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 OLFML2BQ68BL8 750 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 SNRNP48Q6IEG0 339 aaKnown RBP21.73■■□□□ 1.07
CLN3-202ENST00000355477 MFSD6Q6ZSS7 791 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 CPXCR1Q8N123 301 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 TRPV1Q8NER1 839 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 STAG1Q8WVM7 1258 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 DPF3Q92784 378 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 MMP19Q99542 508 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 TEX13BQ9BXU2 312 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 SLC38A10Q9HBR0 1119 aa21.73■■□□□ 1.07
CLN3-202ENST00000355477 ZBED4O75132 1171 aa21.72■■□□□ 1.07
CLN3-202ENST00000355477 PGK2P07205 417 aa21.72■■□□□ 1.07
CLN3-202ENST00000355477 SLC1A4P43007 532 aa21.72■■□□□ 1.07
CLN3-202ENST00000355477 KCTD1Q719H9 257 aa21.72■■□□□ 1.07
CLN3-202ENST00000355477 ANKLE1Q8NAG6 615 aa21.72■■□□□ 1.07
CLN3-202ENST00000355477 RAVER2Q9HCJ3 691 aaKnown RBP21.72■■□□□ 1.07
CLN3-202ENST00000355477 TCP11L1Q9NUJ3 509 aa21.72■■□□□ 1.07
CLN3-202ENST00000355477 DNAH12Q6ZR08 3092 aa21.71■■□□□ 1.07
CLN3-202ENST00000355477 ZNF213O14771 459 aa21.71■■□□□ 1.07
CLN3-202ENST00000355477 ATP2A1O14983 1001 aa21.71■■□□□ 1.07
CLN3-202ENST00000355477 SLC4A3P48751 1232 aa21.71■■□□□ 1.07
CLN3-202ENST00000355477 STAT2P52630 851 aa21.71■■□□□ 1.07
CLN3-202ENST00000355477 RCSD1Q6JBY9 416 aa21.71■■□□□ 1.07
CLN3-202ENST00000355477 MAML3Q96JK9 1138 aa21.71■■□□□ 1.07
CLN3-202ENST00000355477 DSCC1Q9BVC3 393 aa21.71■■□□□ 1.07
CLN3-202ENST00000355477 ISY1Q9ULR0 285 aaKnown RBP21.71■■□□□ 1.07
CLN3-202ENST00000355477 MTMR7Q9Y216 660 aa21.71■■□□□ 1.07
CLN3-202ENST00000355477 H0YGN5 161 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 PCP11498 1178 aaKnown RBP21.7■■□□□ 1.06
CLN3-202ENST00000355477 COPB2P35606 906 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 KCTD2Q14681 263 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 PRAMEF19Q5SWL8 479 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 NECAB2Q7Z6G3 386 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 TMEM47Q9BQJ4 181 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 HTATIP2Q9BUP3 242 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 SLC5A4Q9NY91 659 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 CTDP1Q9Y5B0 961 aaPredicted RBP21.7■■□□□ 1.06
CLN3-202ENST00000355477 NEDD4P46934 1319 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 MCM3APO60318 1980 aa21.7■■□□□ 1.06
CLN3-202ENST00000355477 TOP1P11387 765 aaKnown RBP21.69■■□□□ 1.06
CLN3-202ENST00000355477 CYBAP13498 195 aa21.69■■□□□ 1.06
CLN3-202ENST00000355477 CNGA1P29973 690 aa21.69■■□□□ 1.06
CLN3-202ENST00000355477 ZNF792Q3KQV3 632 aa21.69■■□□□ 1.06
CLN3-202ENST00000355477 CHURC1Q8WUH1 139 aa21.69■■□□□ 1.06
CLN3-202ENST00000355477 RNF41Q9H4P4 317 aaPredicted RBP21.69■■□□□ 1.06
CLN3-202ENST00000355477 PLA2G6O60733 806 aa21.68■■□□□ 1.06
CLN3-202ENST00000355477 CHMLP26374 656 aa21.68■■□□□ 1.06
CLN3-202ENST00000355477 IKQ13123 557 aaPredicted RBP21.68■■□□□ 1.06
CLN3-202ENST00000355477 FAM160B2Q86V87 743 aa21.68■■□□□ 1.06
CLN3-202ENST00000355477 DDX20Q9UHI6 824 aaKnown RBP21.68■■□□□ 1.06
CLN3-202ENST00000355477 ZNF536O15090 1300 aa21.67■■□□□ 1.06
CLN3-202ENST00000355477 OAZ1P54368 228 aa21.67■■□□□ 1.06
CLN3-202ENST00000355477 SNAP25P60880 206 aa21.67■■□□□ 1.06
CLN3-202ENST00000355477 TTBK2Q6IQ55 1244 aa21.67■■□□□ 1.06
CLN3-202ENST00000355477 ZKSCAN3Q9BRR0 538 aa21.67■■□□□ 1.06
CLN3-202ENST00000355477 RANBP2P49792 3224 aaKnown RBP21.66■■□□□ 1.06
CLN3-202ENST00000355477 FDX1P10109 184 aa21.66■■□□□ 1.06
CLN3-202ENST00000355477 DCAF4Q8WV16 495 aa21.66■■□□□ 1.06
CLN3-202ENST00000355477 ESR2Q92731 530 aa21.66■■□□□ 1.06
CLN3-202ENST00000355477 AGBL1Q96MI9 1066 aa21.66■■□□□ 1.06
CLN3-202ENST00000355477 TTC14Q96N46 770 aa21.66■■□□□ 1.06
CLN3-202ENST00000355477 CTNNA3Q9UI47 895 aa21.66■■□□□ 1.06
CLN3-202ENST00000355477 PRR12Q9ULL5 1215 aa21.66■■□□□ 1.06
CLN3-202ENST00000355477 DIS3Q9Y2L1 958 aaKnown RBP21.66■■□□□ 1.06
CLN3-202ENST00000355477 TRIOBPQ9H2D6 2365 aa21.65■■□□□ 1.06
CLN3-202ENST00000355477 DNAJC25-GNG10A0A024R161 153 aa21.65■■□□□ 1.06
CLN3-202ENST00000355477 KDM4AO75164 1064 aa21.65■■□□□ 1.06
CLN3-202ENST00000355477 IMMTQ16891 758 aaKnown RBP21.65■■□□□ 1.06
CLN3-202ENST00000355477 CCDC96Q2M329 555 aa21.65■■□□□ 1.06
CLN3-202ENST00000355477 DDX11Q96FC9 970 aa21.65■■□□□ 1.06
CLN3-202ENST00000355477 TINF2Q9BSI4 451 aa21.65■■□□□ 1.06
CLN3-202ENST00000355477 C11orf49Q9H6J7 331 aa21.65■■□□□ 1.06
CLN3-202ENST00000355477 PFASO15067 1338 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 FRMPD2Q68DX3 1309 aaPredicted RBP21.64■■□□□ 1.05
CLN3-202ENST00000355477 B4E1Z4 1266 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 COL6A1P12109 1028 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 SLC16A2P36021 539 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 PTH1RQ03431 593 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 ANO1Q5XXA6 986 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 CCDC174Q6PII3 467 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.64■■□□□ 1.05
CLN3-202ENST00000355477 SKAP1Q86WV1 359 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 CHST13Q8NET6 341 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 GPCPD1Q9NPB8 672 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 HOMER2Q9NSB8 354 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 ZSWIM5Q9P217 1185 aa21.64■■□□□ 1.05
CLN3-202ENST00000355477 RAD50Q92878 1312 aa21.63■■□□□ 1.05
CLN3-202ENST00000355477 SEPT4O43236 478 aa21.63■■□□□ 1.05
CLN3-202ENST00000355477 EVI5O60447 810 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms