RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 FOXN1O15353 648 aa25.86■■□□□ 1.73
SHMT1-203ENST00000354098 LBX2Q6XYB7 198 aa25.86■■□□□ 1.73
SHMT1-203ENST00000354098 CHURC1Q8WUH1 139 aa25.86■■□□□ 1.73
SHMT1-203ENST00000354098 PAGR1Q9BTK6 254 aa25.86■■□□□ 1.73
SHMT1-203ENST00000354098 ADAMTS5Q9UNA0 930 aa25.86■■□□□ 1.73
SHMT1-203ENST00000354098 PLA2G6O60733 806 aa25.85■■□□□ 1.73
SHMT1-203ENST00000354098 AK2P54819 239 aa25.85■■□□□ 1.73
SHMT1-203ENST00000354098 BTNL9Q6UXG8 535 aa25.85■■□□□ 1.73
SHMT1-203ENST00000354098 SYNE3Q6ZMZ3 975 aa25.85■■□□□ 1.73
SHMT1-203ENST00000354098 FAM160B2Q86V87 743 aa25.85■■□□□ 1.73
SHMT1-203ENST00000354098 ALDH8A1Q9H2A2 487 aaPredicted RBP25.85■■□□□ 1.73
SHMT1-203ENST00000354098 BTBD7Q9P203 1132 aa25.85■■□□□ 1.73
SHMT1-203ENST00000354098 PRR12Q9ULL5 1215 aa25.85■■□□□ 1.73
SHMT1-203ENST00000354098 MYPNQ86TC9 1320 aa25.85■■□□□ 1.73
SHMT1-203ENST00000354098 VWA5AO00534 786 aa25.84■■□□□ 1.73
SHMT1-203ENST00000354098 CNMDO75829 334 aa25.84■■□□□ 1.73
SHMT1-203ENST00000354098 BCRP11274 1271 aa25.84■■□□□ 1.73
SHMT1-203ENST00000354098 GCLCP48506 637 aaPredicted RBP25.84■■□□□ 1.73
SHMT1-203ENST00000354098 SNAP25P60880 206 aa25.84■■□□□ 1.73
SHMT1-203ENST00000354098 KLRF2D3W0D1 207 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 ZBTB43O43298 467 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 EVCP57679 992 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 Q3C1V9 767 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 FANCBQ8NB91 859 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 MAP3K14Q99558 947 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 GPR25O00155 361 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 CALM1P0DP23 149 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 CALM2P0DP24 149 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 CALM3P0DP25 149 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 SYDE2Q5VT97 1194 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 NBPF11Q86T75 865 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 CTCFLQ8NI51 663 aaPredicted RBP25.83■■□□□ 1.73
SHMT1-203ENST00000354098 HPS5Q9UPZ3 1129 aa25.83■■□□□ 1.73
SHMT1-203ENST00000354098 GOLGA8BA8MQT2 603 aa25.82■■□□□ 1.72
SHMT1-203ENST00000354098 SLC35G1Q2M3R5 365 aa25.82■■□□□ 1.72
SHMT1-203ENST00000354098 NOL8Q76FK4 1167 aaKnown RBP25.82■■□□□ 1.72
SHMT1-203ENST00000354098 RABGAP1Q9Y3P9 1069 aa25.82■■□□□ 1.72
SHMT1-203ENST00000354098 PDIA3P30101 505 aaKnown RBP25.81■■□□□ 1.72
SHMT1-203ENST00000354098 TMEM132BQ14DG7 1078 aa25.81■■□□□ 1.72
SHMT1-203ENST00000354098 RABEP1Q15276 862 aa25.81■■□□□ 1.72
SHMT1-203ENST00000354098 CMTR1Q8N1G2 835 aaKnown RBP25.81■■□□□ 1.72
SHMT1-203ENST00000354098 REPS2Q8NFH8 660 aa25.81■■□□□ 1.72
SHMT1-203ENST00000354098 GTF3C2Q8WUA4 911 aaPredicted RBP25.81■■□□□ 1.72
SHMT1-203ENST00000354098 MORF4L1Q9UBU8 362 aa25.81■■□□□ 1.72
SHMT1-203ENST00000354098 TPCN1Q9ULQ1 816 aa25.81■■□□□ 1.72
SHMT1-203ENST00000354098 ECM2O94769 699 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-203ENST00000354098 PLEKHA8P1O95397 391 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 ERVK-9P63128 1117 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 ERVK-24P63145 666 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 FAM110CQ1W6H9 321 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 ADGRF4Q8IZF3 695 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 SLC38A10Q9HBR0 1119 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 VAT1LQ9HCJ6 419 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 FAM217BQ9NTX9 383 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-203ENST00000354098 GOLGA8AA7E2F4 631 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 HSPA8P11142 646 aaKnown RBP25.8■■□□□ 1.72
SHMT1-203ENST00000354098 CDC27P30260 824 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 KIF5BP33176 963 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 MB21D1Q8N884 522 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 GPRC5AQ8NFJ5 357 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 ZNF296Q8WUU4 475 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-203ENST00000354098 A0A0G2JMZ2 1700 aa25.8■■□□□ 1.72
SHMT1-203ENST00000354098 CYTH3O43739 400 aa25.79■■□□□ 1.72
SHMT1-203ENST00000354098 ZBED4O75132 1171 aa25.79■■□□□ 1.72
SHMT1-203ENST00000354098 METAP2P50579 478 aaKnown RBP eCLIP25.79■■□□□ 1.72
SHMT1-203ENST00000354098 SP3Q02447 781 aa25.79■■□□□ 1.72
SHMT1-203ENST00000354098 ANKRD1Q15327 319 aa25.79■■□□□ 1.72
SHMT1-203ENST00000354098 CPXCR1Q8N123 301 aa25.79■■□□□ 1.72
SHMT1-203ENST00000354098 ZNF214Q9UL59 606 aaPredicted RBP25.79■■□□□ 1.72
SHMT1-203ENST00000354098 RCAN1P53805 252 aa25.78■■□□□ 1.72
SHMT1-203ENST00000354098 CCT2P78371 535 aaKnown RBP25.78■■□□□ 1.72
SHMT1-203ENST00000354098 STK3Q13188 491 aa25.78■■□□□ 1.72
SHMT1-203ENST00000354098 PLS1Q14651 629 aa25.78■■□□□ 1.72
SHMT1-203ENST00000354098 RTN1Q16799 776 aa25.78■■□□□ 1.72
SHMT1-203ENST00000354098 SRBD1Q8N5C6 995 aaKnown RBP25.78■■□□□ 1.72
SHMT1-203ENST00000354098 ZNF274Q96GC6 653 aaPredicted RBP25.78■■□□□ 1.72
SHMT1-203ENST00000354098 RANBP17Q9H2T7 1088 aaKnown RBP25.78■■□□□ 1.72
SHMT1-203ENST00000354098 JMJD4Q9H9V9 463 aa25.78■■□□□ 1.72
SHMT1-203ENST00000354098 RAVER2Q9HCJ3 691 aaKnown RBP25.78■■□□□ 1.72
SHMT1-203ENST00000354098 COL11A1P12107 1806 aaPredicted RBP25.78■■□□□ 1.72
SHMT1-203ENST00000354098 DHX16O60231 1041 aaKnown RBP25.77■■□□□ 1.72
SHMT1-203ENST00000354098 ADD1P35611 737 aaKnown RBP25.77■■□□□ 1.72
SHMT1-203ENST00000354098 CAP1Q01518 475 aa25.77■■□□□ 1.72
SHMT1-203ENST00000354098 NOM1Q5C9Z4 860 aaKnown RBP25.77■■□□□ 1.72
SHMT1-203ENST00000354098 CCDC174Q6PII3 467 aa25.77■■□□□ 1.72
SHMT1-203ENST00000354098 CCDC82Q8N4S0 544 aa25.77■■□□□ 1.72
SHMT1-203ENST00000354098 CTDP1Q9Y5B0 961 aaPredicted RBP25.77■■□□□ 1.72
SHMT1-203ENST00000354098 ZNF536O15090 1300 aa25.77■■□□□ 1.72
SHMT1-203ENST00000354098 LBX1P52954 281 aa25.77■■□□□ 1.72
SHMT1-203ENST00000354098 TMTC3Q6ZXV5 915 aa25.77■■□□□ 1.72
SHMT1-203ENST00000354098 SPATC1LQ9H0A9 340 aa25.77■■□□□ 1.72
SHMT1-203ENST00000354098 PORCNQ9H237 461 aa25.77■■□□□ 1.72
SHMT1-203ENST00000354098 RIOX1Q9H6W3 641 aa25.77■■□□□ 1.72
SHMT1-203ENST00000354098 NCOA5Q9HCD5 579 aaKnown RBP25.77■■□□□ 1.72
SHMT1-203ENST00000354098 FKTNO75072 461 aa25.76■■□□□ 1.71
SHMT1-203ENST00000354098 CTGFP29279 349 aa25.76■■□□□ 1.71
SHMT1-203ENST00000354098 CTCFP49711 727 aaPredicted RBP25.76■■□□□ 1.71
SHMT1-203ENST00000354098 LACTBP83111 547 aaPredicted RBP25.76■■□□□ 1.71
SHMT1-203ENST00000354098 MOV10L1Q9BXT6 1211 aaKnown RBP25.76■■□□□ 1.71
SHMT1-203ENST00000354098 ARHGAP39Q9C0H5 1083 aa25.76■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms