RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 STAT6P42226 847 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 INF2Q27J81 1249 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 CERS3Q8IU89 383 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 DAGLBQ8NCG7 672 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 GJD4Q96KN9 370 aaPredicted RBP24.65■■□□□ 1.54
SHMT1-202ENST00000352886 EYA3Q99504 573 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 UBR3Q6ZT12 1888 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 CDK8P49336 464 aa24.64■■□□□ 1.54
SHMT1-202ENST00000352886 ST5P78524 1137 aa24.64■■□□□ 1.54
SHMT1-202ENST00000352886 GALNT17Q6IS24 598 aa24.64■■□□□ 1.54
SHMT1-202ENST00000352886 DTHD1Q6ZMT9 781 aa24.64■■□□□ 1.54
SHMT1-202ENST00000352886 C16orf86Q6ZW13 317 aa24.64■■□□□ 1.54
SHMT1-202ENST00000352886 FAM177A1Q8N128 213 aaPredicted RBP24.64■■□□□ 1.54
SHMT1-202ENST00000352886 IGSF22Q8N9C0 903 aa24.64■■□□□ 1.54
SHMT1-202ENST00000352886 LRRN4CLQ8ND94 238 aa24.64■■□□□ 1.54
SHMT1-202ENST00000352886 MYH1P12882 1939 aa24.64■■□□□ 1.54
SHMT1-202ENST00000352886 KLRF2D3W0D1 207 aa24.64■■□□□ 1.53
SHMT1-202ENST00000352886 GYS1P13807 737 aa24.64■■□□□ 1.53
SHMT1-202ENST00000352886 FILIP1LQ4L180 1135 aa24.64■■□□□ 1.53
SHMT1-202ENST00000352886 FEZ1Q99689 392 aa24.64■■□□□ 1.53
SHMT1-202ENST00000352886 TMEM60Q9H2L4 133 aa24.64■■□□□ 1.53
SHMT1-202ENST00000352886 CPVLQ9H3G5 476 aa24.64■■□□□ 1.53
SHMT1-202ENST00000352886 RPN1P04843 607 aaKnown RBP24.63■■□□□ 1.53
SHMT1-202ENST00000352886 SERPINB2P05120 415 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 PBX1P40424 430 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 ZNF397Q8NF99 534 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-202ENST00000352886 DISC1Q9NRI5 854 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 FLT1P17948 1338 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 GOLGA6L9A6NEM1 432 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 RBL2Q08999 1139 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 KMT5BQ4FZB7 885 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 MFSD14BQ5SR56 506 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 ZNF658Q5TYW1 1059 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-202ENST00000352886 PPFIBP1Q86W92 1011 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 RBM17Q96I25 401 aaKnown RBP24.63■■□□□ 1.53
SHMT1-202ENST00000352886 PANX2Q96RD6 677 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 LZTS2Q9BRK4 669 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 RMND1Q9NWS8 449 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 PODXL2Q9NZ53 605 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 RWDD2AQ9UIY3 292 aa24.63■■□□□ 1.53
SHMT1-202ENST00000352886 SPATA31A6Q5VVP1 1343 aa24.62■■□□□ 1.53
SHMT1-202ENST00000352886 EP400Q96L91 3159 aa24.62■■□□□ 1.53
SHMT1-202ENST00000352886 PP2D1A8MPX8 630 aa24.62■■□□□ 1.53
SHMT1-202ENST00000352886 PAK1Q13153 545 aa24.62■■□□□ 1.53
SHMT1-202ENST00000352886 RASSF8Q8NHQ8 419 aa24.62■■□□□ 1.53
SHMT1-202ENST00000352886 CPLX3Q8WVH0 158 aa24.62■■□□□ 1.53
SHMT1-202ENST00000352886 DESI2Q9BSY9 194 aa24.62■■□□□ 1.53
SHMT1-202ENST00000352886 URI1O94763 535 aaPredicted RBP24.61■■□□□ 1.53
SHMT1-202ENST00000352886 PLCG2P16885 1265 aa24.61■■□□□ 1.53
SHMT1-202ENST00000352886 CCT6AP40227 531 aaKnown RBP24.61■■□□□ 1.53
SHMT1-202ENST00000352886 ERCC6LQ2NKX8 1250 aa24.61■■□□□ 1.53
SHMT1-202ENST00000352886 NEDD1Q8NHV4 660 aa24.61■■□□□ 1.53
SHMT1-202ENST00000352886 FBXO38Q6PIJ6 1188 aa24.61■■□□□ 1.53
SHMT1-202ENST00000352886 NELFBQ8WX92 580 aa24.61■■□□□ 1.53
SHMT1-202ENST00000352886 SPZ1Q9BXG8 430 aa24.61■■□□□ 1.53
SHMT1-202ENST00000352886 GDAQ9Y2T3 454 aa24.61■■□□□ 1.53
SHMT1-202ENST00000352886 SOWAHDA6NJG2 315 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 PARP1P09874 1014 aaKnown RBP24.6■■□□□ 1.53
SHMT1-202ENST00000352886 RHBDL3P58872 404 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 MTF1Q14872 753 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 NAALADL2Q58DX5 795 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 POLLQ9UGP5 575 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 MAPK8IP1Q9UQF2 711 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 NAPAP54920 295 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 KRT31Q15323 416 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 USP17L2Q6R6M4 530 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 PARP3Q9Y6F1 533 aa24.6■■□□□ 1.53
SHMT1-202ENST00000352886 MYH8P13535 1937 aa24.59■■□□□ 1.53
SHMT1-202ENST00000352886 GNG11P61952 73 aa24.59■■□□□ 1.53
SHMT1-202ENST00000352886 TBC1D16Q8TBP0 767 aa24.59■■□□□ 1.53
SHMT1-202ENST00000352886 ZMYND12Q9H0C1 365 aa24.59■■□□□ 1.53
SHMT1-202ENST00000352886 LIMA1Q9UHB6 759 aaKnown RBP24.59■■□□□ 1.53
SHMT1-202ENST00000352886 BBOX1O75936 387 aa24.59■■□□□ 1.53
SHMT1-202ENST00000352886 UBA7P41226 1012 aa24.59■■□□□ 1.53
SHMT1-202ENST00000352886 PRCPP42785 496 aa24.59■■□□□ 1.53
SHMT1-202ENST00000352886 SMAP1Q8IYB5 467 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-202ENST00000352886 CEP95Q96GE4 821 aa24.59■■□□□ 1.53
SHMT1-202ENST00000352886 FAM163AQ96GL9 167 aaPredicted RBP24.58■■□□□ 1.53
SHMT1-202ENST00000352886 WDR24Q96S15 920 aa24.58■■□□□ 1.53
SHMT1-202ENST00000352886 LAD1O00515 517 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 N4BP3O15049 544 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 MFAP3LO75121 409 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 CASP14P31944 242 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 MEX3CQ5U5Q3 659 aaKnown RBP24.57■■□□□ 1.52
SHMT1-202ENST00000352886 SLF2Q8IX21 1173 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 PLIN2Q99541 437 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 NAA15Q9BXJ9 866 aaKnown RBP24.57■■□□□ 1.52
SHMT1-202ENST00000352886 PRDM10Q9NQV6 1147 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 OGFRQ9NZT2 677 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 CREBRFQ8IUR6 639 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 SEPT12Q8IYM1 358 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 CCDC12Q8WUD4 166 aaPredicted RBP24.57■■□□□ 1.52
SHMT1-202ENST00000352886 CCSER1Q9C0I3 900 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 VPS16Q9H269 839 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 DDX41Q9UJV9 622 aaKnown RBP24.57■■□□□ 1.52
SHMT1-202ENST00000352886 GAKO14976 1311 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 ITIH6Q6UXX5 1313 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 FOCADQ5VW36 1801 aa24.57■■□□□ 1.52
SHMT1-202ENST00000352886 LRRC10BA6NIK2 292 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 C6orf229H3BNL8 230 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms