RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 FOCADQ5VW36 1801 aa25.03■■□□□ 1.6
UPF3A-201ENST00000351487 LRRC10BA6NIK2 292 aa25.03■■□□□ 1.6
UPF3A-201ENST00000351487 GPSM2P81274 684 aa25.03■■□□□ 1.6
UPF3A-201ENST00000351487 RRAGBQ5VZM2 374 aa25.03■■□□□ 1.6
UPF3A-201ENST00000351487 CD209Q9NNX6 404 aa25.03■■□□□ 1.6
UPF3A-201ENST00000351487 DISC1Q9NRI5 854 aa25.03■■□□□ 1.6
UPF3A-201ENST00000351487 GPR75-ASB3A0A0A6YYF3 556 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 IL1R1P14778 569 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 PAK1Q13153 545 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 C16orf86Q6ZW13 317 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 PPFIBP1Q86W92 1011 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 MAPKAPK5Q8IW41 473 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 SPZ1Q9BXG8 430 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 LAD1O00515 517 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 RPN1P04843 607 aaKnown RBP25.02■■□□□ 1.6
UPF3A-201ENST00000351487 STAT6P42226 847 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 BTDP43251 543 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 SPAG1Q07617 926 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 ERCC6LQ2NKX8 1250 aa25.02■■□□□ 1.6
UPF3A-201ENST00000351487 RPGRQ92834 1020 aaKnown RBP25.02■■□□□ 1.6
UPF3A-201ENST00000351487 GPR101Q96P66 508 aaPredicted RBP25.02■■□□□ 1.6
UPF3A-201ENST00000351487 H2AFXP16104 143 aaPredicted RBP25.01■■□□□ 1.59
UPF3A-201ENST00000351487 FECHP22830 423 aa25.01■■□□□ 1.59
UPF3A-201ENST00000351487 ATP2B4P23634 1241 aa25.01■■□□□ 1.59
UPF3A-201ENST00000351487 RBL2Q08999 1139 aa25.01■■□□□ 1.59
UPF3A-201ENST00000351487 DTHD1Q6ZMT9 781 aa25.01■■□□□ 1.59
UPF3A-201ENST00000351487 STX8Q9UNK0 236 aa25.01■■□□□ 1.59
UPF3A-201ENST00000351487 MFAP3LO75121 409 aa25.01■■□□□ 1.59
UPF3A-201ENST00000351487 PRPHP41219 470 aa25.01■■□□□ 1.59
UPF3A-201ENST00000351487 HEATR3Q7Z4Q2 680 aa25.01■■□□□ 1.59
UPF3A-201ENST00000351487 UFL1O94874 794 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 PLCG2P16885 1265 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 KARSQ15046 597 aaKnown RBP25■■□□□ 1.59
UPF3A-201ENST00000351487 KRT31Q15323 416 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 NAALADL2Q58DX5 795 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 CCDC51Q96ER9 411 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 CCSER1Q9C0I3 900 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 SAP30BPQ9UHR5 308 aaKnown RBP25■■□□□ 1.59
UPF3A-201ENST00000351487 URI1O94763 535 aaPredicted RBP25■■□□□ 1.59
UPF3A-201ENST00000351487 MYL1P05976 194 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 CCDC175P0C221 793 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 SEMA3FQ13275 785 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 NEDD1Q8NHV4 660 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 FAM163AQ96GL9 167 aaPredicted RBP25■■□□□ 1.59
UPF3A-201ENST00000351487 ZMYND12Q9H0C1 365 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 TMEM60Q9H2L4 133 aa25■■□□□ 1.59
UPF3A-201ENST00000351487 CDK8P49336 464 aa24.99■■□□□ 1.59
UPF3A-201ENST00000351487 INF2Q27J81 1249 aa24.99■■□□□ 1.59
UPF3A-201ENST00000351487 CNGA4Q8IV77 575 aa24.99■■□□□ 1.59
UPF3A-201ENST00000351487 NELFBQ8WX92 580 aa24.99■■□□□ 1.59
UPF3A-201ENST00000351487 MYH8P13535 1937 aa24.99■■□□□ 1.59
UPF3A-201ENST00000351487 LTBP1Q14766 1721 aa24.99■■□□□ 1.59
UPF3A-201ENST00000351487 FLT1P17948 1338 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 KLRF2D3W0D1 207 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 ZSCAN20P17040 1043 aaPredicted RBP24.98■■□□□ 1.59
UPF3A-201ENST00000351487 CDC25AP30304 524 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 GNG11P61952 73 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 WDR24Q96S15 920 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 EYA3Q99504 573 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 ZMYND15Q9H091 742 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 GGA1Q9UJY5 639 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 LRRC37AA6NMS7 1700 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 SOWAHDA6NJG2 315 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 GYPCP04921 128 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 CASQ1P31415 396 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 KCNB1Q14721 858 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 TEX11Q8IYF3 940 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 KIFC2Q96AC6 838 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 DESI2Q9BSY9 194 aa24.98■■□□□ 1.59
UPF3A-201ENST00000351487 GAKO14976 1311 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 TADA3O75528 432 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 SMARCA1P28370 1054 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 MTF1Q14872 753 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 CCDC12Q8WUD4 166 aaPredicted RBP24.97■■□□□ 1.59
UPF3A-201ENST00000351487 SPATA31A6Q5VVP1 1343 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 NOVP48745 357 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 RHBDL3P58872 404 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 TCP11X2Q5H9J9 407 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 RAD9BQ6WBX8 426 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 MNS1Q8NEH6 495 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 ANKRD20A12PQ8NF67 263 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 MRPL44Q9H9J2 332 aaKnown RBP24.97■■□□□ 1.59
UPF3A-201ENST00000351487 PODXL2Q9NZ53 605 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 GDAQ9Y2T3 454 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 ADGRG1Q9Y653 693 aa24.97■■□□□ 1.59
UPF3A-201ENST00000351487 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.96■■□□□ 1.59
UPF3A-201ENST00000351487 EFCAB8A8MWE9 144 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 PRCPP42785 496 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 COPB1P53618 953 aaKnown RBP24.96■■□□□ 1.59
UPF3A-201ENST00000351487 MAP3K9P80192 1104 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 LRRC4BQ9NT99 713 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 KBTBD4Q9NVX7 518 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 FAM53CQ9NYF3 392 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 N4BP3O15049 544 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 PARP1P09874 1014 aaKnown RBP24.96■■□□□ 1.59
UPF3A-201ENST00000351487 CASP14P31944 242 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 CCT6AP40227 531 aaKnown RBP24.96■■□□□ 1.59
UPF3A-201ENST00000351487 ST5P78524 1137 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 TRIM14Q14142 442 aa24.96■■□□□ 1.59
UPF3A-201ENST00000351487 KRT25Q7Z3Z0 450 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms