RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 MYH14Q7Z406 1995 aaKnown RBP25.16■■□□□ 1.62
TRIM28-202ENST00000341753 CYP2D7A0A087X1C5 515 aa25.15■■□□□ 1.62
TRIM28-202ENST00000341753 MCM7P33993 719 aa25.15■■□□□ 1.62
TRIM28-202ENST00000341753 CHRNDQ07001 517 aa25.15■■□□□ 1.62
TRIM28-202ENST00000341753 LRRC10BA6NIK2 292 aa25.15■■□□□ 1.62
TRIM28-202ENST00000341753 E2F4Q16254 413 aa25.15■■□□□ 1.62
TRIM28-202ENST00000341753 PTF1AQ7RTS3 328 aa25.15■■□□□ 1.62
TRIM28-202ENST00000341753 ANKRD20A12PQ8NF67 263 aa25.15■■□□□ 1.62
TRIM28-202ENST00000341753 SAR1BQ9Y6B6 198 aa25.15■■□□□ 1.62
TRIM28-202ENST00000341753 PRPF6O94906 941 aaKnown RBP25.14■■□□□ 1.62
TRIM28-202ENST00000341753 PRCPP42785 496 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 MAGEA9P43362 315 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 IL17AQ16552 155 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 TMTC2Q8N394 836 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 CCDC24Q8N4L8 307 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 GNL3LQ9NVN8 582 aaKnown RBP25.14■■□□□ 1.62
TRIM28-202ENST00000341753 MKRN1Q9UHC7 482 aaKnown RBP25.14■■□□□ 1.62
TRIM28-202ENST00000341753 GGCXP38435 758 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 IGHMBP2P38935 993 aaKnown RBP25.14■■□□□ 1.62
TRIM28-202ENST00000341753 CCDC152Q4G0S7 254 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 PDXDC2PQ6P474 469 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 EFCC1Q9HA90 598 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 ABCF2Q9UG63 623 aa25.14■■□□□ 1.62
TRIM28-202ENST00000341753 CHD4Q14839 1912 aa25.14■■□□□ 1.61
TRIM28-202ENST00000341753 GYG1P46976 350 aa25.14■■□□□ 1.61
TRIM28-202ENST00000341753 SEC23AQ15436 765 aa25.14■■□□□ 1.61
TRIM28-202ENST00000341753 TTC31Q49AM3 519 aaPredicted RBP25.14■■□□□ 1.61
TRIM28-202ENST00000341753 PIK3AP1Q6ZUJ8 805 aa25.14■■□□□ 1.61
TRIM28-202ENST00000341753 ADGRA1Q86SQ6 560 aa25.14■■□□□ 1.61
TRIM28-202ENST00000341753 ENAHQ8N8S7 591 aaPredicted RBP25.14■■□□□ 1.61
TRIM28-202ENST00000341753 BAZ2BQ9UIF8 2168 aaKnown RBP25.13■■□□□ 1.61
TRIM28-202ENST00000341753 PARP1P09874 1014 aaKnown RBP25.13■■□□□ 1.61
TRIM28-202ENST00000341753 PMS1P54277 932 aaKnown RBP25.13■■□□□ 1.61
TRIM28-202ENST00000341753 MRPS25P82663 173 aaKnown RBP25.13■■□□□ 1.61
TRIM28-202ENST00000341753 STIM1Q13586 685 aa25.13■■□□□ 1.61
TRIM28-202ENST00000341753 IRF2BP1Q8IU81 584 aa25.13■■□□□ 1.61
TRIM28-202ENST00000341753 OR8K1Q8NGG5 319 aa25.13■■□□□ 1.61
TRIM28-202ENST00000341753 CAGE1Q8TC20 777 aa25.13■■□□□ 1.61
TRIM28-202ENST00000341753 LRP2BPQ9P2M1 347 aa25.13■■□□□ 1.61
TRIM28-202ENST00000341753 DUSP10Q9Y6W6 482 aa25.13■■□□□ 1.61
TRIM28-202ENST00000341753 RCCD1A6NED2 376 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 PSMD14O00487 310 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 FUT2Q10981 343 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 NPY5RQ15761 445 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 CTR9Q6PD62 1173 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 WDR59Q6PJI9 974 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 KIAA1328Q86T90 577 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 LUC7L2Q9Y383 392 aaKnown RBP25.12■■□□□ 1.61
TRIM28-202ENST00000341753 RPN1P04843 607 aaKnown RBP25.12■■□□□ 1.61
TRIM28-202ENST00000341753 VEGFAP15692 232 aaPredicted RBP25.12■■□□□ 1.61
TRIM28-202ENST00000341753 SPAG1Q07617 926 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 ERFEQ4G0M1 354 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 SMARCC1Q92922 1105 aaPredicted RBP25.12■■□□□ 1.61
TRIM28-202ENST00000341753 JAKMIP2Q96AA8 810 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 LACRTQ9GZZ8 138 aa25.12■■□□□ 1.61
TRIM28-202ENST00000341753 ZC3H4Q9UPT8 1303 aaKnown RBP25.11■■□□□ 1.61
TRIM28-202ENST00000341753 PDE2AO00408 941 aaPredicted RBP25.11■■□□□ 1.61
TRIM28-202ENST00000341753 TUBBP07437 444 aa25.11■■□□□ 1.61
TRIM28-202ENST00000341753 ATP2C1P98194 919 aaPredicted RBP25.11■■□□□ 1.61
TRIM28-202ENST00000341753 C2orf54Q08AI8 447 aa25.11■■□□□ 1.61
TRIM28-202ENST00000341753 TRIM14Q14142 442 aa25.11■■□□□ 1.61
TRIM28-202ENST00000341753 BCL9LQ86UU0 1499 aa25.11■■□□□ 1.61
TRIM28-202ENST00000341753 AARSP49588 968 aaKnown RBP eCLIP25.11■■□□□ 1.61
TRIM28-202ENST00000341753 CORO7P57737 925 aa25.11■■□□□ 1.61
TRIM28-202ENST00000341753 MB21D1Q8N884 522 aa25.11■■□□□ 1.61
TRIM28-202ENST00000341753 COG1Q8WTW3 980 aa25.11■■□□□ 1.61
TRIM28-202ENST00000341753 PLIN2Q99541 437 aa25.11■■□□□ 1.61
TRIM28-202ENST00000341753 RNF41Q9H4P4 317 aaPredicted RBP25.11■■□□□ 1.61
TRIM28-202ENST00000341753 HAUS4Q9H6D7 363 aa25.11■■□□□ 1.61
TRIM28-202ENST00000341753 GTPBP6O43824 516 aaPredicted RBP25.1■■□□□ 1.61
TRIM28-202ENST00000341753 KLK7P49862 253 aa25.1■■□□□ 1.61
TRIM28-202ENST00000341753 ZNF658Q5TYW1 1059 aaPredicted RBP25.1■■□□□ 1.61
TRIM28-202ENST00000341753 PPFIA4O75335 1185 aa25.1■■□□□ 1.61
TRIM28-202ENST00000341753 IFIT1BQ5T764 474 aaKnown RBP25.1■■□□□ 1.61
TRIM28-202ENST00000341753 GPIHBP1Q8IV16 184 aa25.1■■□□□ 1.61
TRIM28-202ENST00000341753 ESR2Q92731 530 aa25.1■■□□□ 1.61
TRIM28-202ENST00000341753 TNFRSF25Q93038 417 aa25.1■■□□□ 1.61
TRIM28-202ENST00000341753 EHD4Q9H223 541 aa25.1■■□□□ 1.61
TRIM28-202ENST00000341753 TAF1P21675 1872 aa25.1■■□□□ 1.61
TRIM28-202ENST00000341753 MACROD2A1Z1Q3 448 aa25.09■■□□□ 1.61
TRIM28-202ENST00000341753 CYP7A1P22680 504 aa25.09■■□□□ 1.61
TRIM28-202ENST00000341753 CRACR2AQ9BSW2 395 aa25.09■■□□□ 1.61
TRIM28-202ENST00000341753 SELENOOQ9BVL4 669 aa25.09■■□□□ 1.61
TRIM28-202ENST00000341753 VIPAS39Q9H9C1 493 aa25.09■■□□□ 1.61
TRIM28-202ENST00000341753 BRMS1Q9HCU9 246 aa25.09■■□□□ 1.61
TRIM28-202ENST00000341753 AGPAT5Q9NUQ2 364 aa25.09■■□□□ 1.61
TRIM28-202ENST00000341753 PRPF3O43395 683 aaKnown RBP25.09■■□□□ 1.61
TRIM28-202ENST00000341753 CYP27A1Q02318 531 aa25.09■■□□□ 1.61
TRIM28-202ENST00000341753 FAM98CQ17RN3 349 aaKnown RBP25.09■■□□□ 1.61
TRIM28-202ENST00000341753 CTCFLQ8NI51 663 aaPredicted RBP25.09■■□□□ 1.61
TRIM28-202ENST00000341753 ZSCAN10Q96SZ4 725 aaPredicted RBP25.09■■□□□ 1.61
TRIM28-202ENST00000341753 LRP5O75197 1615 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 EVX2Q03828 476 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 MAP9Q49MG5 647 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 MYH6P13533 1939 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 RTL9Q8NET4 1388 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 AGPSO00116 658 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 GNAT2P19087 354 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 PARP10Q53GL7 1025 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 CATIPQ7Z7H3 387 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms