RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RDH13Q8NBN7 331 aa14.03□□□□□ -0.16
USP47-202ENST00000339865 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.03□□□□□ -0.16
USP47-202ENST00000339865 ARHGAP5Q13017 1502 aa14.03□□□□□ -0.16
USP47-202ENST00000339865 DKC1O60832 514 aaKnown RBP eCLIP14.03□□□□□ -0.16
USP47-202ENST00000339865 KIF11P52732 1056 aa14.03□□□□□ -0.16
USP47-202ENST00000339865 ATG16L1Q676U5 607 aa14.03□□□□□ -0.16
USP47-202ENST00000339865 KIF9Q9HAQ2 790 aa14.03□□□□□ -0.16
USP47-202ENST00000339865 DDX39AO00148 427 aaKnown RBP14.03□□□□□ -0.16
USP47-202ENST00000339865 NOP56O00567 594 aaKnown RBP14.03□□□□□ -0.16
USP47-202ENST00000339865 NONOQ15233 471 aaKnown RBP eCLIP14.03□□□□□ -0.16
USP47-202ENST00000339865 CACTINQ8WUQ7 758 aaKnown RBP14.03□□□□□ -0.16
USP47-202ENST00000339865 NELFBQ8WX92 580 aa14.03□□□□□ -0.16
USP47-202ENST00000339865 CFLARO15519 480 aa14.02□□□□□ -0.16
USP47-202ENST00000339865 TNNI1P19237 187 aa14.02□□□□□ -0.16
USP47-202ENST00000339865 ZNF449Q6P9G9 518 aa14.02□□□□□ -0.16
USP47-202ENST00000339865 YIPF3Q9GZM5 350 aa14.02□□□□□ -0.16
USP47-202ENST00000339865 PICK1Q9NRD5 415 aa14.02□□□□□ -0.16
USP47-202ENST00000339865 MAGED2Q9UNF1 606 aaPredicted RBP14.02□□□□□ -0.16
USP47-202ENST00000339865 ATF2P15336 505 aa14.02□□□□□ -0.16
USP47-202ENST00000339865 PAG1Q9NWQ8 432 aa14.02□□□□□ -0.16
USP47-202ENST00000339865 RAB44Q7Z6P3 723 aaPredicted RBP14.02□□□□□ -0.16
USP47-202ENST00000339865 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.02□□□□□ -0.16
USP47-202ENST00000339865 SPZ1Q9BXG8 430 aa14.02□□□□□ -0.16
USP47-202ENST00000339865 SH2D4AQ9H788 454 aa14.02□□□□□ -0.16
USP47-202ENST00000339865 PACSIN2Q9UNF0 486 aaPredicted RBP14.02□□□□□ -0.16
USP47-202ENST00000339865 HIPK4Q8NE63 616 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 PHACTR3Q96KR7 559 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 NFKBIL1Q9UBC1 381 aaPredicted RBP14.02□□□□□ -0.17
USP47-202ENST00000339865 KRT4P19013 534 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 TJAP1Q5JTD0 557 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 CREB3L3Q68CJ9 461 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 FCHSD1Q86WN1 690 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 MIGA1Q8NAN2 632 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 CDKL2Q92772 493 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 KIFC3Q9BVG8 833 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 SLC7A5P2Q9GIP4 190 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 ZFYVE1Q9HBF4 777 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 RAB20Q9NX57 234 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 EXOC7Q9UPT5 735 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 BRDTQ58F21 947 aaPredicted RBP14.02□□□□□ -0.17
USP47-202ENST00000339865 SNX21Q969T3 373 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 CCDC90BQ9GZT6 254 aa14.02□□□□□ -0.17
USP47-202ENST00000339865 SGK1O00141 431 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 NME8Q8N427 588 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.01□□□□□ -0.175e-6■■■■□ 19.4
USP47-202ENST00000339865 TRAIPQ9BWF2 469 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 GUCY2DQ02846 1103 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 PDE1BQ01064 536 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 HERC4Q5GLZ8 1057 aaPredicted RBP14.01□□□□□ -0.17
USP47-202ENST00000339865 PDXDC1Q6P996 788 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 CDC26Q8NHZ8 85 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 POTEB3A0JP26 581 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 PARP1P09874 1014 aaKnown RBP14.01□□□□□ -0.17
USP47-202ENST00000339865 SF3B3Q15393 1217 aaKnown RBP14.01□□□□□ -0.17
USP47-202ENST00000339865 PPP2R5EQ16537 467 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 POTEBQ6S5H4 581 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 WDR91A4D1P6 747 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 EXOC5O00471 708 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 PDE6BP35913 854 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 POSTNQ15063 836 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 NAA35Q5VZE5 725 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 HAUS3Q68CZ6 603 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 DYMQ7RTS9 669 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 SZRD1Q7Z422 152 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 TRIM42Q8IWZ5 723 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 RHPN1Q8TCX5 695 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 MED10Q9BTT4 135 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 TBK1Q9UHD2 729 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 M0QZ92 97 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 HSPA8P11142 646 aaKnown RBP14.01□□□□□ -0.17
USP47-202ENST00000339865 TXKP42681 527 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 UBE3AQ05086 875 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 DMTNQ08495 405 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 IFRD2Q12894 506 aaPredicted RBP14.01□□□□□ -0.17
USP47-202ENST00000339865 ATL3Q6DD88 541 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 MAML1Q92585 1016 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 SERPINI1Q99574 410 aa14.01□□□□□ -0.17
USP47-202ENST00000339865 STAT1P42224 750 aa14□□□□□ -0.17
USP47-202ENST00000339865 GDAP1Q8TB36 358 aa14□□□□□ -0.17
USP47-202ENST00000339865 DESI2Q9BSY9 194 aa14□□□□□ -0.17
USP47-202ENST00000339865 GPCPD1Q9NPB8 672 aa14□□□□□ -0.17
USP47-202ENST00000339865 TMOD4Q9NZQ9 345 aa14□□□□□ -0.17
USP47-202ENST00000339865 NFE2L3Q9Y4A8 694 aa14□□□□□ -0.17
USP47-202ENST00000339865 EXOC3O60645 756 aa14□□□□□ -0.17
USP47-202ENST00000339865 MSH2P43246 934 aa14□□□□□ -0.17
USP47-202ENST00000339865 NMIQ13287 307 aaPredicted RBP14□□□□□ -0.17
USP47-202ENST00000339865 TEX9Q8N6V9 391 aa14□□□□□ -0.17
USP47-202ENST00000339865 U2AF1L4Q8WU68 220 aaKnown RBP14□□□□□ -0.17
USP47-202ENST00000339865 UPF3AQ9H1J1 476 aaKnown RBP14□□□□□ -0.17
USP47-202ENST00000339865 COG4Q9H9E3 785 aa14□□□□□ -0.17
USP47-202ENST00000339865 ZNF148Q9UQR1 794 aa14□□□□□ -0.17
USP47-202ENST00000339865 ANKRD12Q6UB98 2062 aa14□□□□□ -0.17
USP47-202ENST00000339865 SYNDIG1LA6NDD5 238 aa14□□□□□ -0.17
USP47-202ENST00000339865 KRT8P05787 483 aa14□□□□□ -0.17
USP47-202ENST00000339865 BRD2P25440 801 aaKnown RBP14□□□□□ -0.17
USP47-202ENST00000339865 PDE1AP54750 535 aa14□□□□□ -0.17
USP47-202ENST00000339865 ZNF644Q9H582 1327 aaPredicted RBP14□□□□□ -0.17
USP47-202ENST00000339865 FAM95CA0A1B0GW59 222 aa13.99□□□□□ -0.17
USP47-202ENST00000339865 STAM2O75886 525 aa13.99□□□□□ -0.17
USP47-202ENST00000339865 TRAPPC10P48553 1259 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms