RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CCDC96Q2M329 555 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 HOMER1Q86YM7 354 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 ADGRF4Q8IZF3 695 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 JMJD4Q9H9V9 463 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 VAT1LQ9HCJ6 419 aa17.75■□□□□ 0.43
LIMS1-202ENST00000338045 ESYT2A0FGR8 921 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 PHF20L1A8MW92 1017 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 ADAMTS3O15072 1205 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 NDUFB10O96000 172 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 TRAPPC10P48553 1259 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 KCTD1Q719H9 257 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 ENGASEQ8NFI3 743 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 MRPS27Q92552 414 aaKnown RBP17.74■□□□□ 0.43
LIMS1-202ENST00000338045 DEFB129Q9H1M3 183 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 GOLPH3LQ9H4A5 285 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 PCDHB6Q9Y5E3 794 aa17.74■□□□□ 0.43
LIMS1-202ENST00000338045 SNW1Q13573 536 aaKnown RBP17.73■□□□□ 0.43
LIMS1-202ENST00000338045 NOM1Q5C9Z4 860 aaKnown RBP17.73■□□□□ 0.43
LIMS1-202ENST00000338045 TRPM4Q8TD43 1214 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 ARHGEF10LQ9HCE6 1279 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 NOL7Q9UMY1 257 aaKnown RBP17.73■□□□□ 0.43
LIMS1-202ENST00000338045 CEP131Q9UPN4 1083 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 SCAF8Q9UPN6 1271 aaKnown RBP17.73■□□□□ 0.43
LIMS1-202ENST00000338045 TMX2Q9Y320 296 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 PNMA6FA0A0J9YX94 578 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 TRIM75PA6NK02 468 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 CMA1P23946 247 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 MARCKSP29966 332 aaPredicted RBP17.73■□□□□ 0.43
LIMS1-202ENST00000338045 NAPAP54920 295 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 FAM160A1Q05DH4 1040 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 L1TD1Q5T7N2 865 aaKnown RBP17.73■□□□□ 0.43
LIMS1-202ENST00000338045 APOBEC3FQ8IUX4 373 aaKnown RBP17.73■□□□□ 0.43
LIMS1-202ENST00000338045 FSIP1Q8NA03 581 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 NUP62CLQ9H1M0 184 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 CLSTN2Q9H4D0 955 aa17.73■□□□□ 0.43
LIMS1-202ENST00000338045 ASNSP08243 561 aa17.72■□□□□ 0.43
LIMS1-202ENST00000338045 SLC16A2P36021 539 aa17.72■□□□□ 0.43
LIMS1-202ENST00000338045 CCDC73Q6ZRK6 1079 aa17.72■□□□□ 0.43
LIMS1-202ENST00000338045 RBM43Q6ZSC3 357 aaKnown RBP17.72■□□□□ 0.43
LIMS1-202ENST00000338045 RNF181Q9P0P0 153 aa17.72■□□□□ 0.43
LIMS1-202ENST00000338045 ZBTB5O15062 677 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 CUTAO60888 179 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 BMP15O95972 392 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 PTPREP23469 700 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 GNA11P29992 359 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 EPS15P42566 896 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 ECE1P42892 770 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 MRE11P49959 708 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 PPP1R18Q6NYC8 613 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 PIK3AP1Q6ZUJ8 805 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 FMR1NBQ8N0W7 255 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-202ENST00000338045 ACER1Q8TDN7 264 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 GINM1Q9NU53 330 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 PCDHA6Q9UN73 950 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 PCDHA8Q9Y5H6 950 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 FAM237AA0A1B0GTK4 181 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 USP17L10C9JJH3 530 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 ANGEL2Q5VTE6 544 aaKnown RBP17.71■□□□□ 0.43
LIMS1-202ENST00000338045 BTNL9Q6UXG8 535 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 KRI1Q8N9T8 703 aaKnown RBP17.71■□□□□ 0.43
LIMS1-202ENST00000338045 GRPEL1Q9HAV7 217 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 C6orf50Q9HD87 102 aa17.71■□□□□ 0.43
LIMS1-202ENST00000338045 FBXO2Q9UK22 296 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-202ENST00000338045 SMCO2A6NFE2 343 aa17.7■□□□□ 0.42
LIMS1-202ENST00000338045 WNT7AO00755 349 aa17.7■□□□□ 0.42
LIMS1-202ENST00000338045 PPP1R11O60927 126 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-202ENST00000338045 DDNO94850 711 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-202ENST00000338045 BMP3P12645 472 aa17.7■□□□□ 0.42
LIMS1-202ENST00000338045 HIRAP54198 1017 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-202ENST00000338045 TTC38Q5R3I4 469 aa17.7■□□□□ 0.42
LIMS1-202ENST00000338045 FUCA2Q9BTY2 467 aa17.7■□□□□ 0.42
LIMS1-202ENST00000338045 RAD21O60216 631 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 ATP2B1P20020 1258 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 NDUFA8P51970 172 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 NBPF12Q5TAG4 269 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-202ENST00000338045 SHC4Q6S5L8 630 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 RASGRP4Q8TDF6 673 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 TNMDQ9H2S6 317 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 SH2D4AQ9H788 454 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 GOPCQ9HD26 462 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 HPSEQ9Y251 543 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 SRPRBQ9Y5M8 271 aaKnown RBP17.69■□□□□ 0.42
LIMS1-202ENST00000338045 PPP2R3BQ9Y5P8 575 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 SRCAPQ6ZRS2 3230 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 A0A1B0GVL5 298 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 CTNND1O60716 968 aaKnown RBP17.69■□□□□ 0.42
LIMS1-202ENST00000338045 PDE4CQ08493 712 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 MAP3K11Q16584 847 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 C9orf131Q5VYM1 1079 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 RESP18Q5W5W9 173 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 ZNF579Q8NAF0 562 aaKnown RBP17.69■□□□□ 0.42
LIMS1-202ENST00000338045 COA7Q96BR5 231 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 NUP88Q99567 741 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-202ENST00000338045 VCPKMTQ9H867 229 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 GGA3Q9NZ52 723 aa17.69■□□□□ 0.42
LIMS1-202ENST00000338045 PITPNM2Q9BZ72 1349 aa17.68■□□□□ 0.42
LIMS1-202ENST00000338045 CCDC194A0A1B0GVG4 234 aa17.68■□□□□ 0.42
LIMS1-202ENST00000338045 KIAA1755Q5JYT7 1200 aa17.68■□□□□ 0.42
LIMS1-202ENST00000338045 HOOK2Q96ED9 719 aa17.68■□□□□ 0.42
LIMS1-202ENST00000338045 TSPY26PQ9H489 355 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms