RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 FAM160B2Q86V87 743 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 CDCA5Q96FF9 252 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 CPVLQ9H3G5 476 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 PICK1Q9NRD5 415 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 RTEL1Q9NZ71 1219 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 RCOR1Q9UKL0 485 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 PCDHA4Q9UN74 947 aa17.17■□□□□ 0.34
CCDC88C-202ENST00000334448 MYH6P13533 1939 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 UNCXA6NJT0 531 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 PPP1R12BO60237 982 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 MBD3O95983 291 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 NF2P35240 595 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 STAT2P52630 851 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 MAP3K9P80192 1104 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 KLHL40Q2TBA0 621 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 RILPL1Q5EBL4 403 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 SYDE2Q5VT97 1194 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 LEO1Q8WVC0 666 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 GPKOWQ92917 476 aaPredicted RBP eCLIP17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 USP28Q96RU2 1077 aa17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 GLIS2Q9BZE0 524 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-202ENST00000334448 USP17L10C9JJH3 530 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 FIBPO43427 364 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 PRPF40AO75400 957 aaKnown RBP17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 TRAPPC10P48553 1259 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 BACE1P56817 501 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 NLRP5P59047 1200 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 TRAF1Q13077 416 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 FOXD4L6Q3SYB3 417 aaPredicted RBP17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 FOXD4L3Q6VB84 417 aaPredicted RBP17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 HEATR3Q7Z4Q2 680 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 ZNF280CQ8ND82 737 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 OXER1Q8TDS5 423 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 CHURC1Q8WUH1 139 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 FEZ1Q99689 392 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 FEM1BQ9UK73 627 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 SNCAIPQ9Y6H5 919 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 MYH15Q9Y2K3 1946 aa17.15■□□□□ 0.34
CCDC88C-202ENST00000334448 C19orf81C9J6K1 198 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 TMEM232C9JQI7 657 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 TRAK2O60296 914 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 PPP1R11O60927 126 aaPredicted RBP17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 NCLP19338 710 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 GNA11P29992 359 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 SLC16A2P36021 539 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 IREB2P48200 963 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 UBE2HP62256 183 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 NR5A1Q13285 461 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 GNL2Q13823 731 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 NBR1Q14596 966 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 FAM83BQ5T0W9 1011 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 HOMER1Q86YM7 354 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 BLIDQ8IZY5 108 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 ZKSCAN4Q969J2 545 aaPredicted RBP17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 SPATA32Q96LK8 384 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 NUP88Q99567 741 aaPredicted RBP17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 GLT8D2Q9H1C3 349 aa17.14■□□□□ 0.33
CCDC88C-202ENST00000334448 NAPAP54920 295 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 VGLL4Q14135 290 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 CDC37Q16543 378 aaPredicted RBP17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 QRICH1Q2TAL8 776 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 SH3D19Q5HYK7 790 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 ANO1Q5XXA6 986 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 CCDC84Q86UT8 332 aaPredicted RBP17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 LINC00301Q8NCQ3 95 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 RBM46Q8TBY0 533 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 BICD2Q8TD16 824 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 KCNG4Q8TDN1 519 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 PIBF1Q8WXW3 757 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 RANBP17Q9H2T7 1088 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 GDPD2Q9HCC8 539 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 VAT1LQ9HCJ6 419 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 C6orf50Q9HD87 102 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 PRR12Q9ULL5 1215 aa17.13■□□□□ 0.33
CCDC88C-202ENST00000334448 DCAF8L1A6NGE4 600 aa17.12■□□□□ 0.33
CCDC88C-202ENST00000334448 EAPPQ56P03 285 aaPredicted RBP17.12■□□□□ 0.33
CCDC88C-202ENST00000334448 LDHDQ86WU2 507 aa17.12■□□□□ 0.33
CCDC88C-202ENST00000334448 SPICE1Q8N0Z3 855 aa17.12■□□□□ 0.33
CCDC88C-202ENST00000334448 EMILIN3Q9NT22 766 aa17.12■□□□□ 0.33
CCDC88C-202ENST00000334448 TFIP11Q9UBB9 837 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-202ENST00000334448 AFG3L2Q9Y4W6 797 aa17.12■□□□□ 0.33
CCDC88C-202ENST00000334448 PHIPQ8WWQ0 1821 aa17.12■□□□□ 0.33
CCDC88C-202ENST00000334448 BAZ2BQ9UIF8 2168 aaKnown RBP17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 BMP15O95972 392 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 FDX1P10109 184 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 VCAM1P19320 739 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 TOB1P50616 345 aaPredicted RBP17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 SPP2Q13103 211 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 MTMR2Q13614 643 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 SLC39A14Q15043 492 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 PTPAQ15257 358 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 LDLRAD1Q5T700 205 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 ANKRD13AQ8IZ07 590 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 ANP32EQ9BTT0 268 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 AMNQ9BXJ7 453 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 RIC8AQ9NPQ8 531 aa17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.11■□□□□ 0.33
CCDC88C-202ENST00000334448 NOL7Q9UMY1 257 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms