RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 SARNPP82979 210 aaKnown RBP11.27□□□□□ -0.61
CHD3-201ENST00000330494 GBP6Q6ZN66 633 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 KSR1Q8IVT5 923 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 HOOK2Q96ED9 719 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 NOX5Q96PH1 765 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 ANKFY1Q9P2R3 1169 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 KCNJ18B7U540 433 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 MAGEA1P43355 309 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 CACNB1Q02641 598 aaPredicted RBP11.26□□□□□ -0.61
CHD3-201ENST00000330494 KCNJ12Q14500 433 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 DPY19L2Q6NUT2 758 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 KRT27Q7Z3Y8 459 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 GPT2Q8TD30 523 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 FAM204AQ9H8W3 233 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 ATP8A2Q9NTI2 1148 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 CPSF2Q9P2I0 782 aaKnown RBP11.26□□□□□ -0.61
CHD3-201ENST00000330494 UTP11Q9Y3A2 253 aaKnown RBP11.26□□□□□ -0.61
CHD3-201ENST00000330494 WDR17Q8IZU2 1322 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 IL6STP40189 918 aaPredicted RBP11.26□□□□□ -0.61
CHD3-201ENST00000330494 PPP1R2P41236 205 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 GOLGA8FQ08AF8 430 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 GOLGA8DPQ0D2H9 430 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 TRIM14Q14142 442 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 DIXDC1Q155Q3 683 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 ELF2Q15723 593 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 SUSD4Q5VX71 490 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 SULF1Q8IWU6 871 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 SMYD4Q8IYR2 804 aaPredicted RBP11.26□□□□□ -0.61
CHD3-201ENST00000330494 AS3MTQ9HBK9 375 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 ADALQ6DHV7 355 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 OTUD6AQ7L8S5 288 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 PLA2G4DQ86XP0 818 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 TM6SF1Q9BZW5 370 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 BUB1O43683 1085 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 C6orf163Q5TEZ5 329 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 SMIM5Q71RC9 77 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 NEK8Q86SG6 692 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 U2AF1L4Q8WU68 220 aaKnown RBP11.26□□□□□ -0.61
CHD3-201ENST00000330494 RRAGDQ9NQL2 400 aaPredicted RBP11.26□□□□□ -0.61
CHD3-201ENST00000330494 M0QZ92 97 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 DKC1O60832 514 aaKnown RBP eCLIP11.26□□□□□ -0.611e-26■■■■■ 66.1
CHD3-201ENST00000330494 NAA25Q14CX7 972 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 APOL6Q9BWW8 343 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 KIAA1468Q9P260 1216 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 PCDHA7Q9UN72 937 aa11.26□□□□□ -0.61
CHD3-201ENST00000330494 VIMP08670 466 aaKnown RBP11.25□□□□□ -0.61
CHD3-201ENST00000330494 CYP21A2P08686 494 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 OR52Z1P0C646 297 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 COA7Q96BR5 231 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 PCDHA1Q9Y5I3 950 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 GEN1Q17RS7 908 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 USP17L2Q6R6M4 530 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 KRBA2Q6ZNG9 492 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 GRAMD1CQ8IYS0 662 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 PPP1R16BQ96T49 567 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 MMS19Q96T76 1030 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 ATP2A2P16615 1042 aaKnown RBP11.25□□□□□ -0.61
CHD3-201ENST00000330494 Q3C1V9 767 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 BSPRYQ5W0U4 402 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 SEPT14Q6ZU15 432 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 UBL4BQ8N7F7 174 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 CCDC127Q96BQ5 260 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 CSRNP2Q9H175 543 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 SOS2Q07890 1332 aaPredicted RBP11.25□□□□□ -0.61
CHD3-201ENST00000330494 GABPAQ06546 454 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 TNFAIP1Q13829 316 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 PPP2R5BQ15173 497 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 ZMYM1Q5SVZ6 1142 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 MED10Q9BTT4 135 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 STMN4Q9H169 189 aaPredicted RBP11.25□□□□□ -0.61
CHD3-201ENST00000330494 ASIC3Q9UHC3 531 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 LIG4P49917 911 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.25□□□□□ -0.61
CHD3-201ENST00000330494 TAB3Q8N5C8 712 aaPredicted RBP11.25□□□□□ -0.61
CHD3-201ENST00000330494 NUP58Q9BVL2 599 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 COPRSQ9NQ92 184 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 ERBB3P21860 1342 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 CEP152O94986 1710 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 USP17L3A6NCW0 530 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 USP17L4A6NCW7 530 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 MEIS1O00470 390 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 BCRP11274 1271 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 ADD2P35612 726 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 CASC4Q6P4E1 433 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 EEPD1Q7L9B9 569 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 USP17L1Q7RTZ2 530 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 MRPL11Q9Y3B7 192 aaKnown RBP11.25□□□□□ -0.61
CHD3-201ENST00000330494 UBN2Q6ZU65 1347 aa11.25□□□□□ -0.61
CHD3-201ENST00000330494 CDC25AP30304 524 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 CACNB3P54284 484 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 CCDC117Q8IWD4 279 aaPredicted RBP11.24□□□□□ -0.61
CHD3-201ENST00000330494 BEGAINQ9BUH8 593 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 PRDM15P57071 1507 aaPredicted RBP11.24□□□□□ -0.61
CHD3-201ENST00000330494 LRRIQ4A6NIV6 560 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 ZNF365Q70YC5 407 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 MYOCDQ8IZQ8 938 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 NLGN1Q8N2Q7 840 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 CNKSR1Q969H4 720 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 OSBP2Q969R2 916 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 HEG1Q9ULI3 1381 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms