RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 CYFIP2Q96F07 1278 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 SIL1Q9H173 461 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 PI4KAP2A4QPH2 592 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 SPDYE5A6NIY4 337 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 FAM107AO95990 144 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 SLC3A2P08195 630 aaKnown RBP13.2□□□□□ -0.3
SHMT2-201ENST00000328923 SFMBT2Q5VUG0 894 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 ARMC9Q7Z3E5 817 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 ZNF589Q86UQ0 364 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-201ENST00000328923 PI4KAP1Q8N8J0 262 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 MMS19Q96T76 1030 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 PCDHA7Q9UN72 937 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 C2CD2Q9Y426 696 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 BTBD11A6QL63 1104 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 ZNF24P17028 368 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 CCDC15Q0P6D6 951 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 SDCCAG8Q86SQ7 713 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-201ENST00000328923 KCNG4Q8TDN1 519 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 L3MBTL3Q96JM7 780 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-201ENST00000328923 AGXT2Q9BYV1 514 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 PTPDC1A2A3K4 754 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 ZNF189O75820 626 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-201ENST00000328923 YEATS4O95619 227 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 EPB41P11171 864 aaKnown RBP13.19□□□□□ -0.3
SHMT2-201ENST00000328923 MYL5Q02045 173 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 PPARDQ03181 441 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 SLMAPQ14BN4 828 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 CRELD2Q6UXH1 353 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-201ENST00000328923 CCDC170Q8IYT3 715 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 AGAP11Q8TF27 550 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 AENQ8WTP8 325 aaKnown RBP13.19□□□□□ -0.3
SHMT2-201ENST00000328923 EAF2Q96CJ1 260 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-201ENST00000328923 NOP53Q9NZM5 478 aaKnown RBP13.19□□□□□ -0.3
SHMT2-201ENST00000328923 SUN2Q9UH99 717 aa13.19□□□□□ -0.3
SHMT2-201ENST00000328923 SIPA1L3O60292 1781 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-201ENST00000328923 KCNQ3O43525 872 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 EIF4BP23588 611 aaKnown RBP13.18□□□□□ -0.3
SHMT2-201ENST00000328923 MXRA7P84157 204 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 SFSWAPQ12872 951 aaKnown RBP13.18□□□□□ -0.3
SHMT2-201ENST00000328923 NNTQ13423 1086 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 PPP1R7Q15435 360 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 SPECC1LQ69YQ0 1117 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 OCEL1Q9H607 264 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 NLRP2Q9NX02 1062 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 ADAMTS7Q9UKP4 1686 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 UTYO14607 1347 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 TARSL2A2RTX5 802 aaKnown RBP13.18□□□□□ -0.3
SHMT2-201ENST00000328923 SASH1O94885 1247 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 CTDNEP1O95476 244 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 TUBP50607 506 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 KDM7AQ6ZMT4 941 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 TSEN2Q8NCE0 465 aaKnown RBP13.18□□□□□ -0.3
SHMT2-201ENST00000328923 WDR35Q9P2L0 1181 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 HDAC6Q9UBN7 1215 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 FAM184BQ9ULE4 1060 aa13.18□□□□□ -0.3
SHMT2-201ENST00000328923 COL22A1Q8NFW1 1626 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-201ENST00000328923 DNAJC8O75937 253 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-201ENST00000328923 CLTAP09496 248 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 NAT1P18440 290 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 INHBCP55103 352 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 CHRNA2Q15822 529 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 RAPGEF4Q8WZA2 1011 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 CNKSR1Q969H4 720 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 HVCN1Q96D96 273 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 RUFY1Q96T51 708 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 PPANQ9NQ55 473 aaKnown RBP13.17□□□□□ -0.3
SHMT2-201ENST00000328923 POLR3EQ9NVU0 708 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 AATFQ9NY61 560 aaKnown RBP eCLIP13.17□□□□□ -0.3
SHMT2-201ENST00000328923 CHPF2Q9P2E5 772 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 GOLGA6L10A6NI86 522 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 KRT14P02533 472 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 GNAQP50148 359 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 CCDC57Q2TAC2 916 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 GALNT17Q6IS24 598 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 PNMA8AQ86V59 439 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-201ENST00000328923 DZIP3Q86Y13 1208 aaKnown RBP13.17□□□□□ -0.3
SHMT2-201ENST00000328923 LINC00301Q8NCQ3 95 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 CAPZA3Q96KX2 299 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 PA2G4Q9UQ80 394 aaKnown RBP13.17□□□□□ -0.3
SHMT2-201ENST00000328923 CPDO75976 1380 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 COL15A1P39059 1388 aa13.17□□□□□ -0.3
SHMT2-201ENST00000328923 RASSF10A6NK89 507 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 N4BP3O15049 544 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 CREB3O43889 395 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 SRGAP2O75044 1071 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 QPCTQ16769 361 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 TMEM132AQ24JP5 1023 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 MAEAQ7L5Y9 396 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 DHX32Q7L7V1 743 aaKnown RBP13.16□□□□□ -0.3
SHMT2-201ENST00000328923 SENP2Q9HC62 589 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 C9orf78Q9NZ63 289 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-201ENST00000328923 ZNF510Q9Y2H8 683 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 ENC1O14682 589 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 MKRN4PQ13434 485 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-201ENST00000328923 LACTB2Q53H82 288 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-201ENST00000328923 ELOA2Q8IYF1 753 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-201ENST00000328923 C8orf76Q96K31 380 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 PANK4Q9NVE7 773 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 AFF2P51816 1311 aa13.16□□□□□ -0.3
SHMT2-201ENST00000328923 MEGF6O75095 1541 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms