RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 RRP1BQ14684 758 aaKnown RBP25.66■■□□□ 1.7
PDLIM2-202ENST00000308354 SPC24Q8NBT2 197 aa25.66■■□□□ 1.7
PDLIM2-202ENST00000308354 CCDC148Q8NFR7 591 aa25.66■■□□□ 1.7
PDLIM2-202ENST00000308354 JDP2Q8WYK2 163 aa25.66■■□□□ 1.7
PDLIM2-202ENST00000308354 TTC12Q9H892 705 aaPredicted RBP25.66■■□□□ 1.7
PDLIM2-202ENST00000308354 ANO10Q9NW15 660 aa25.66■■□□□ 1.7
PDLIM2-202ENST00000308354 PCDHA6Q9UN73 950 aa25.66■■□□□ 1.7
PDLIM2-202ENST00000308354 PCDHA8Q9Y5H6 950 aa25.66■■□□□ 1.7
PDLIM2-202ENST00000308354 ATRNL1Q5VV63 1379 aa25.66■■□□□ 1.7
PDLIM2-202ENST00000308354 MCM7P33993 719 aa25.65■■□□□ 1.7
PDLIM2-202ENST00000308354 CCDC96Q2M329 555 aa25.65■■□□□ 1.7
PDLIM2-202ENST00000308354 LONRF3Q496Y0 759 aa25.65■■□□□ 1.7
PDLIM2-202ENST00000308354 FAM237AA0A1B0GTK4 181 aa25.65■■□□□ 1.7
PDLIM2-202ENST00000308354 M0R2N6 131 aa25.65■■□□□ 1.7
PDLIM2-202ENST00000308354 PTGDRQ13258 359 aa25.65■■□□□ 1.7
PDLIM2-202ENST00000308354 CDAN1Q8IWY9 1227 aa25.65■■□□□ 1.7
PDLIM2-202ENST00000308354 KIAA1468Q9P260 1216 aa25.65■■□□□ 1.7
PDLIM2-202ENST00000308354 SCAF8Q9UPN6 1271 aaKnown RBP25.65■■□□□ 1.7
PDLIM2-202ENST00000308354 ABCB5Q2M3G0 1257 aa25.64■■□□□ 1.7
PDLIM2-202ENST00000308354 SIAH1Q8IUQ4 282 aa25.64■■□□□ 1.7
PDLIM2-202ENST00000308354 GREB1LQ9C091 1923 aaPredicted RBP25.64■■□□□ 1.7
PDLIM2-202ENST00000308354 BIN1O00499 593 aa25.64■■□□□ 1.69
PDLIM2-202ENST00000308354 SMARCA1P28370 1054 aa25.64■■□□□ 1.69
PDLIM2-202ENST00000308354 CIAPIN1Q6FI81 312 aa25.64■■□□□ 1.69
PDLIM2-202ENST00000308354 AGBL3Q8NEM8 1001 aa25.64■■□□□ 1.69
PDLIM2-202ENST00000308354 KANSL2Q9H9L4 492 aa25.64■■□□□ 1.69
PDLIM2-202ENST00000308354 CCDC194A0A1B0GVG4 234 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 SMCO2A6NFE2 343 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 METTL16Q86W50 562 aaKnown RBP25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 PDILTQ8N807 584 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 COA7Q96BR5 231 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 MYH4Q9Y623 1939 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 GH2P01242 217 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 ICA1Q05084 483 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 NBPF9Q3BBW0 867 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 SPDYE2Q495Y8 402 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 ADGRF4Q8IZF3 695 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 TRIM5Q9C035 493 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 ZMYND12Q9H0C1 365 aa25.63■■□□□ 1.69
PDLIM2-202ENST00000308354 RASSF7Q02833 373 aa25.62■■□□□ 1.69
PDLIM2-202ENST00000308354 INF2Q27J81 1249 aa25.62■■□□□ 1.69
PDLIM2-202ENST00000308354 TMEM39BQ9GZU3 492 aa25.62■■□□□ 1.69
PDLIM2-202ENST00000308354 JMJD4Q9H9V9 463 aa25.62■■□□□ 1.69
PDLIM2-202ENST00000308354 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.62■■□□□ 1.69
PDLIM2-202ENST00000308354 FAM13BQ9NYF5 915 aa25.62■■□□□ 1.69
PDLIM2-202ENST00000308354 CNTNAP1P78357 1384 aa25.62■■□□□ 1.69
PDLIM2-202ENST00000308354 GOLGA6L19H0YKK7 550 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 POLR2DO15514 142 aaKnown RBP25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 PTGER2P43116 358 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 ISM2Q6H9L7 571 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 TMEM179Q6ZVK1 233 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 CEP57L1Q8IYX8 460 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 DAGLBQ8NCG7 672 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 EPSTI1Q96J88 318 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 TIGD1Q96MW7 591 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 VWA3AA6NCI4 1184 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 TRAPPC10P48553 1259 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 PNOCQ13519 176 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 PLA2G4DQ86XP0 818 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 DHX40Q8IX18 779 aaKnown RBP25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 ZNF579Q8NAF0 562 aaKnown RBP25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 CNNM3Q8NE01 707 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 FAM151AQ8WW52 585 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 NYAP2Q9P242 653 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 CD2APQ9Y5K6 639 aa25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 BRCA1P38398 1863 aaKnown RBP25.61■■□□□ 1.69
PDLIM2-202ENST00000308354 FOXN1O15353 648 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 ZNF75DP51815 510 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 RBM26Q5T8P6 1007 aaKnown RBP25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 KRBA2Q6ZNG9 492 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 NLGN2Q8NFZ4 835 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 UPF1Q92900 1129 aaKnown RBP eCLIP25.6■■□□□ 1.694e-7■■■■■ 26.8
PDLIM2-202ENST00000308354 FER1L6Q2WGJ9 1857 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 SRCAPQ6ZRS2 3230 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 USP17L10C9JJH3 530 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 WNT10BO00744 389 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 ATP2C1P98194 919 aaPredicted RBP25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 DPCR1Q3MIW9 517 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 GALNT17Q6IS24 598 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 CCDC12Q8WUD4 166 aaPredicted RBP25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 MKL1Q969V6 931 aa25.6■■□□□ 1.69
PDLIM2-202ENST00000308354 SLFN13Q68D06 897 aa25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 NAP1L5Q96NT1 182 aaPredicted RBP25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 C6orf50Q9HD87 102 aa25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 BECN2A8MW95 431 aa25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 OFD1O75665 1012 aa25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 BMP15O95972 392 aa25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 EGFRP00533 1210 aa25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 SLC1A4P43007 532 aa25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 PRELPP51888 382 aa25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 ZRSR1Q15695 479 aaKnown RBP25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 GPATCH4Q5T3I0 446 aaKnown RBP25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 MIGA2Q7L4E1 593 aa25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 NUP88Q99567 741 aaPredicted RBP25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 BIN2Q9UBW5 565 aaPredicted RBP25.59■■□□□ 1.69
PDLIM2-202ENST00000308354 PPP1R11O60927 126 aaPredicted RBP25.58■■□□□ 1.69
PDLIM2-202ENST00000308354 IL17AQ16552 155 aa25.58■■□□□ 1.69
PDLIM2-202ENST00000308354 SYMPKQ92797 1274 aaKnown RBP25.58■■□□□ 1.69
PDLIM2-202ENST00000308354 MYOZ2Q9NPC6 264 aa25.58■■□□□ 1.69
PDLIM2-202ENST00000308354 SERTAD1Q9UHV2 236 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms