RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 DESI2Q9BSY9 194 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 RIMBP2O15034 1052 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 CCP110O43303 1012 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 LONP1P36776 959 aaKnown RBP20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 STAT6P42226 847 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 MTF1Q14872 753 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 CCDC178Q5BJE1 867 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 C16orf86Q6ZW13 317 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 ERO1AQ96HE7 468 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 GDAQ9Y2T3 454 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 GTPBP6O43824 516 aaPredicted RBP20.77■□□□□ 0.92
SHKBP1-201ENST00000291842 ADRA2BP18089 450 aa20.77■□□□□ 0.92
SHKBP1-201ENST00000291842 RHBDL3P58872 404 aa20.77■□□□□ 0.92
SHKBP1-201ENST00000291842 DDR1Q08345 913 aa20.77■□□□□ 0.92
SHKBP1-201ENST00000291842 DTHD1Q6ZMT9 781 aa20.77■□□□□ 0.92
SHKBP1-201ENST00000291842 CEP95Q96GE4 821 aa20.77■□□□□ 0.92
SHKBP1-201ENST00000291842 ADD3Q9UEY8 706 aaKnown RBP20.77■□□□□ 0.92
SHKBP1-201ENST00000291842 SNED1Q8TER0 1413 aa20.77■□□□□ 0.92
SHKBP1-201ENST00000291842 SPATA31A6Q5VVP1 1343 aa20.77■□□□□ 0.91
SHKBP1-201ENST00000291842 F8W031 263 aaPredicted RBP20.77■□□□□ 0.91
SHKBP1-201ENST00000291842 TXLNAP40222 546 aa20.77■□□□□ 0.91
SHKBP1-201ENST00000291842 RBL2Q08999 1139 aa20.77■□□□□ 0.91
SHKBP1-201ENST00000291842 IGSF22Q8N9C0 903 aa20.77■□□□□ 0.91
SHKBP1-201ENST00000291842 CCDC148Q8NFR7 591 aa20.77■□□□□ 0.91
SHKBP1-201ENST00000291842 L2HGDHQ9H9P8 463 aa20.77■□□□□ 0.91
SHKBP1-201ENST00000291842 ZSCAN12O43309 604 aa20.76■□□□□ 0.91
SHKBP1-201ENST00000291842 STX10O60499 249 aa20.76■□□□□ 0.91
SHKBP1-201ENST00000291842 RPN1P04843 607 aaKnown RBP20.76■□□□□ 0.91
SHKBP1-201ENST00000291842 NAPAP54920 295 aa20.76■□□□□ 0.91
SHKBP1-201ENST00000291842 PICALMQ13492 652 aa20.76■□□□□ 0.91
SHKBP1-201ENST00000291842 ZNF287Q9HBT7 754 aa20.76■□□□□ 0.91
SHKBP1-201ENST00000291842 PARP1P09874 1014 aaKnown RBP20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 GTF2IP78347 998 aa20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 CT47A1Q5JQC4 288 aaPredicted RBP20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 UBA5Q9GZZ9 404 aa20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 DISC1Q9NRI5 854 aa20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 GOLGB1Q14789 3259 aaKnown RBP20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 CDK5RAP2Q96SN8 1893 aa20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 SOWAHDA6NJG2 315 aa20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 AKR1B15C9JRZ8 316 aaPredicted RBP20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 NEDD1Q8NHV4 660 aa20.75■□□□□ 0.91
SHKBP1-201ENST00000291842 BBOX1O75936 387 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 ERCC6LQ2NKX8 1250 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 CCDC93Q567U6 631 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 NAALADL2Q58DX5 795 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 FCHSD1Q86WN1 690 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 NELFBQ8WX92 580 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 PRDM10Q9NQV6 1147 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 CGNQ9P2M7 1197 aaKnown RBP20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 DDX60LQ5H9U9 1706 aaKnown RBP20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 URI1O94763 535 aaPredicted RBP20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 LETM2Q2VYF4 491 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 PPFIBP1Q86W92 1011 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 VPS16Q9H269 839 aa20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.74■□□□□ 0.91
SHKBP1-201ENST00000291842 SMCO2A6NFE2 343 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 USP17L5A8MUK1 530 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 UBA7P41226 1012 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 PRCPP42785 496 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 EIF6P56537 245 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 PAK1Q13153 545 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 KRT31Q15323 416 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 DAGLBQ8NCG7 672 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 PYM1Q9BRP8 204 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 FRMPD2Q68DX3 1309 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 PHLPP2Q6ZVD8 1323 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 PLCG2P16885 1265 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 KMT5BQ4FZB7 885 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 FILIP1LQ4L180 1135 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 ZNF658Q5TYW1 1059 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 CLEC10AQ8IUN9 316 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 LRRC15Q8TF66 581 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 WDR24Q96S15 920 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 PIGSQ96S52 555 aa20.73■□□□□ 0.91
SHKBP1-201ENST00000291842 CCNT1O60563 726 aaKnown RBP20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 CASP14P31944 242 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 PBX1P40424 430 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 CTAGE1Q96RT6 745 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 MXD3Q9BW11 206 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 ZMYND12Q9H0C1 365 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 TAB2Q9NYJ8 693 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 RWDD2AQ9UIY3 292 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 DAGLAQ9Y4D2 1042 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 UBR3Q6ZT12 1888 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 TRIM49BA6NDI0 452 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 POLRMTO00411 1230 aaKnown RBP20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 IGSF3O75054 1194 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 TRIM37O94972 964 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 NT5C2P49902 561 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 GNG11P61952 73 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 LZTS2Q9BRK4 669 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 SPZ1Q9BXG8 430 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 PODXL2Q9NZ53 605 aa20.72■□□□□ 0.91
SHKBP1-201ENST00000291842 N4BP3O15049 544 aa20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 TUBB4AP04350 444 aa20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 GALNT17Q6IS24 598 aa20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 FBXO38Q6PIJ6 1188 aa20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 RRP36Q96EU6 259 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 A0A0U1RQJ8 604 aa20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 ONECUT3O60422 494 aaPredicted RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms