RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TRIM37O94972 964 aa22.73■■□□□ 1.23
VPS53-201ENST00000291074 LONP1P36776 959 aaKnown RBP22.73■■□□□ 1.23
VPS53-201ENST00000291074 CDKAL1Q5VV42 579 aa22.73■■□□□ 1.23
VPS53-201ENST00000291074 RRAGBQ5VZM2 374 aa22.73■■□□□ 1.23
VPS53-201ENST00000291074 REXO1L1PQ8IX06 675 aa22.73■■□□□ 1.23
VPS53-201ENST00000291074 NEDD1Q8NHV4 660 aa22.73■■□□□ 1.23
VPS53-201ENST00000291074 TRPC5Q9UL62 973 aaPredicted RBP22.73■■□□□ 1.23
VPS53-201ENST00000291074 GAKO14976 1311 aa22.73■■□□□ 1.23
VPS53-201ENST00000291074 GTPBP6O43824 516 aaPredicted RBP22.73■■□□□ 1.23
VPS53-201ENST00000291074 SYCP1Q15431 976 aa22.73■■□□□ 1.23
VPS53-201ENST00000291074 ZNF287Q9HBT7 754 aa22.73■■□□□ 1.23
VPS53-201ENST00000291074 FOCADQ5VW36 1801 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 F8W031 263 aaPredicted RBP22.72■■□□□ 1.23
VPS53-201ENST00000291074 HOXA10P31260 410 aaPredicted RBP22.72■■□□□ 1.23
VPS53-201ENST00000291074 PICALMQ13492 652 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 DAGLBQ8NCG7 672 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 PLIN2Q99541 437 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 VAT1LQ9HCJ6 419 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 DAGLAQ9Y4D2 1042 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 ARHGAP6O43182 974 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 PARP1P09874 1014 aaKnown RBP22.72■■□□□ 1.23
VPS53-201ENST00000291074 PLCG2P16885 1265 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 STAT6P42226 847 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 MAPK8IP1Q9UQF2 711 aa22.72■■□□□ 1.23
VPS53-201ENST00000291074 FANCGO15287 622 aa22.71■■□□□ 1.23
VPS53-201ENST00000291074 NAPAP54920 295 aa22.71■■□□□ 1.23
VPS53-201ENST00000291074 DTHD1Q6ZMT9 781 aa22.71■■□□□ 1.23
VPS53-201ENST00000291074 DNAI1Q9UI46 699 aa22.71■■□□□ 1.23
VPS53-201ENST00000291074 LRRC37AA6NMS7 1700 aa22.71■■□□□ 1.23
VPS53-201ENST00000291074 CT47A1Q5JQC4 288 aaPredicted RBP22.71■■□□□ 1.23
VPS53-201ENST00000291074 TOGARAM2Q6ZUX3 1019 aa22.71■■□□□ 1.23
VPS53-201ENST00000291074 LRRN4CLQ8ND94 238 aa22.71■■□□□ 1.23
VPS53-201ENST00000291074 ADD3Q9UEY8 706 aaKnown RBP22.71■■□□□ 1.23
VPS53-201ENST00000291074 GDAQ9Y2T3 454 aa22.71■■□□□ 1.23
VPS53-201ENST00000291074 PPP2R2CQ9Y2T4 447 aa22.71■■□□□ 1.23
VPS53-201ENST00000291074 ANKRD31Q8N7Z5 1873 aa22.7■■□□□ 1.23
VPS53-201ENST00000291074 TXLNAP40222 546 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 ETF1P62495 437 aaKnown RBP22.7■■□□□ 1.22
VPS53-201ENST00000291074 NAALADL2Q58DX5 795 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 TRIM65Q6PJ69 517 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 CERS3Q8IU89 383 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 FAM163AQ96GL9 167 aaPredicted RBP22.7■■□□□ 1.22
VPS53-201ENST00000291074 CRAMP1Q96RY5 1269 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 SPZ1Q9BXG8 430 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 DISC1Q9NRI5 854 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 PPEF1O14829 653 aaPredicted RBP22.7■■□□□ 1.22
VPS53-201ENST00000291074 RPN1P04843 607 aaKnown RBP22.7■■□□□ 1.22
VPS53-201ENST00000291074 HSPA1LP34931 641 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 RASSF8Q8NHQ8 419 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 MXD3Q9BW11 206 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 UBA5Q9GZZ9 404 aa22.7■■□□□ 1.22
VPS53-201ENST00000291074 BRWD3Q6RI45 1802 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 USP17L5A8MUK1 530 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 SLU7O95391 586 aaKnown RBP22.69■■□□□ 1.22
VPS53-201ENST00000291074 CLEC10AQ8IUN9 316 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 FAM177A1Q8N128 213 aaPredicted RBP22.69■■□□□ 1.22
VPS53-201ENST00000291074 TBC1D22AQ8WUA7 517 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 CPLX3Q8WVH0 158 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 CCP110O43303 1012 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 CCT6AP40227 531 aaKnown RBP22.69■■□□□ 1.22
VPS53-201ENST00000291074 LRRC15Q8TF66 581 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 PIGSQ96S52 555 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 LZTS2Q9BRK4 669 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 PYM1Q9BRP8 204 aaKnown RBP22.69■■□□□ 1.22
VPS53-201ENST00000291074 MYH8P13535 1937 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 ADAMTSL1Q8N6G6 1762 aa22.69■■□□□ 1.22
VPS53-201ENST00000291074 MTF1Q14872 753 aa22.68■■□□□ 1.22
VPS53-201ENST00000291074 SLC27A3Q5K4L6 730 aa22.68■■□□□ 1.22
VPS53-201ENST00000291074 GALNT17Q6IS24 598 aa22.68■■□□□ 1.22
VPS53-201ENST00000291074 DESI2Q9BSY9 194 aa22.68■■□□□ 1.22
VPS53-201ENST00000291074 ZMYND12Q9H0C1 365 aa22.68■■□□□ 1.22
VPS53-201ENST00000291074 L2HGDHQ9H9P8 463 aa22.68■■□□□ 1.22
VPS53-201ENST00000291074 FRMPD2Q68DX3 1309 aaPredicted RBP22.68■■□□□ 1.22
VPS53-201ENST00000291074 EIF6P56537 245 aaKnown RBP22.68■■□□□ 1.22
VPS53-201ENST00000291074 FCHSD1Q86WN1 690 aa22.68■■□□□ 1.22
VPS53-201ENST00000291074 SLF2Q8IX21 1173 aa22.68■■□□□ 1.22
VPS53-201ENST00000291074 IGSF22Q8N9C0 903 aa22.68■■□□□ 1.22
VPS53-201ENST00000291074 SMCO2A6NFE2 343 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 STX10O60499 249 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 PBX1P40424 430 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 RBL2Q08999 1139 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 ELF2Q15723 593 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 LETM2Q2VYF4 491 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 CERS5Q8N5B7 392 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 NELFBQ8WX92 580 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 ERO1AQ96HE7 468 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 PAK1Q13153 545 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 ZNF658Q5TYW1 1059 aaPredicted RBP22.67■■□□□ 1.22
VPS53-201ENST00000291074 LRRC47Q8N1G4 583 aaKnown RBP22.67■■□□□ 1.22
VPS53-201ENST00000291074 PROM2Q8N271 834 aa22.67■■□□□ 1.22
VPS53-201ENST00000291074 RRP36Q96EU6 259 aaKnown RBP22.67■■□□□ 1.22
VPS53-201ENST00000291074 QTRT2Q9H974 415 aaKnown RBP22.67■■□□□ 1.22
VPS53-201ENST00000291074 UBA7P41226 1012 aa22.66■■□□□ 1.22
VPS53-201ENST00000291074 DDX4Q9NQI0 724 aaKnown RBP22.66■■□□□ 1.22
VPS53-201ENST00000291074 KLRG2A4D1S0 409 aaPredicted RBP22.66■■□□□ 1.22
VPS53-201ENST00000291074 AKR1B15C9JRZ8 316 aaPredicted RBP22.66■■□□□ 1.22
VPS53-201ENST00000291074 ZSCAN12O43309 604 aa22.66■■□□□ 1.22
VPS53-201ENST00000291074 PRCPP42785 496 aa22.66■■□□□ 1.22
VPS53-201ENST00000291074 KRT31Q15323 416 aa22.66■■□□□ 1.22
VPS53-201ENST00000291074 CREBRFQ8IUR6 639 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms