RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 VCAM1P19320 739 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 FOSBP53539 338 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 HMGCS2P54868 508 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 IKQ13123 557 aaPredicted RBP21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 DGKZQ13574 1117 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 CHURC1Q8WUH1 139 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 OPTNQ96CV9 577 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 MTMR8Q96EF0 704 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 PIGSQ96S52 555 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 SEC63Q9UGP8 760 aaKnown RBP21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 FEM1BQ9UK73 627 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 MYH6P13533 1939 aa21.85■■□□□ 1.09
PDLIM3-202ENST00000284770 IRF6O14896 467 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 ZSCAN22P10073 491 aaPredicted RBP21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 PPIL2Q13356 520 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 HOMER1Q86YM7 354 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 SMC1BQ8NDV3 1235 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 GJB4Q9NTQ9 266 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 TCHHQ07283 1943 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 PASKQ96RG2 1323 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 CXCL11O14625 94 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 XBP1P17861 261 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 TRIM29Q14134 588 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 SYDE2Q5VT97 1194 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 FOXD4L5Q5VV16 416 aaPredicted RBP21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 OTUD7BQ6GQQ9 843 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 FAM160B2Q86V87 743 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 FOXD4L4Q8WXT5 416 aaPredicted RBP21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 TMOD4Q9NZQ9 345 aa21.84■■□□□ 1.09
PDLIM3-202ENST00000284770 BAZ2BQ9UIF8 2168 aaKnown RBP21.83■■□□□ 1.09
PDLIM3-202ENST00000284770 GUCY1B3Q02153 619 aa21.83■■□□□ 1.09
PDLIM3-202ENST00000284770 KRT40Q6A162 431 aa21.83■■□□□ 1.09
PDLIM3-202ENST00000284770 KCNH4Q9UQ05 1017 aa21.83■■□□□ 1.09
PDLIM3-202ENST00000284770 PNMA6FA0A0J9YX94 578 aa21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 ZBTB5O15062 677 aa21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 RPAP3Q9H6T3 665 aaPredicted RBP21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 PRR12Q9ULL5 1215 aa21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 TOMM70O94826 608 aa21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 BAG4O95429 457 aaKnown RBP21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 YY1P25490 414 aa21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 MCM4P33991 863 aa21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 GBP4Q96PP9 640 aa21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 SH3GLB2Q9NR46 395 aa21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 VPS54Q9P1Q0 977 aa21.82■■□□□ 1.08
PDLIM3-202ENST00000284770 A0A0G2JLL6 359 aaPredicted RBP21.81■■□□□ 1.08
PDLIM3-202ENST00000284770 F13A1P00488 732 aa21.81■■□□□ 1.08
PDLIM3-202ENST00000284770 WWC2Q6AWC2 1192 aa21.81■■□□□ 1.08
PDLIM3-202ENST00000284770 HEATR3Q7Z4Q2 680 aa21.81■■□□□ 1.08
PDLIM3-202ENST00000284770 PRRT2Q7Z6L0 340 aaPredicted RBP21.81■■□□□ 1.08
PDLIM3-202ENST00000284770 GPKOWQ92917 476 aaPredicted RBP eCLIP21.81■■□□□ 1.08
PDLIM3-202ENST00000284770 TANGO6Q9C0B7 1094 aa21.81■■□□□ 1.08
PDLIM3-202ENST00000284770 FBXO28Q9NVF7 368 aa21.81■■□□□ 1.08
PDLIM3-202ENST00000284770 BARHL2Q9NY43 387 aa21.81■■□□□ 1.08
PDLIM3-202ENST00000284770 hCG_1984214I3L0E3 225 aa21.8■■□□□ 1.08
PDLIM3-202ENST00000284770 CDC37Q16543 378 aaPredicted RBP21.8■■□□□ 1.08
PDLIM3-202ENST00000284770 ZNF713Q8N859 430 aaPredicted RBP21.8■■□□□ 1.08
PDLIM3-202ENST00000284770 PRPF38AQ8NAV1 312 aaKnown RBP21.8■■□□□ 1.08
PDLIM3-202ENST00000284770 KIFC2Q96AC6 838 aa21.8■■□□□ 1.08
PDLIM3-202ENST00000284770 SHISA4Q96DD7 197 aa21.8■■□□□ 1.08
PDLIM3-202ENST00000284770 SLF1Q9BQI6 1058 aa21.8■■□□□ 1.08
PDLIM3-202ENST00000284770 TRPM7Q96QT4 1865 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 MMP1P03956 469 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 GJA5P36382 358 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 NBR1Q14596 966 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 QRICH1Q2TAL8 776 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 FAM177A1Q8N128 213 aaPredicted RBP21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 PROCA1Q8NCQ7 364 aaPredicted RBP21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 PHF20Q9BVI0 1012 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 KCNJ14Q9UNX9 436 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 STXBP3O00186 592 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 FLOT1O75955 427 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 HUNKP57058 714 aa21.79■■□□□ 1.08
PDLIM3-202ENST00000284770 MYH15Q9Y2K3 1946 aa21.78■■□□□ 1.08
PDLIM3-202ENST00000284770 PPP1R11O60927 126 aaPredicted RBP21.78■■□□□ 1.08
PDLIM3-202ENST00000284770 MCTP1Q6DN14 999 aa21.78■■□□□ 1.08
PDLIM3-202ENST00000284770 TYW1BQ6NUM6 668 aa21.78■■□□□ 1.08
PDLIM3-202ENST00000284770 CATSPERGQ6ZRH7 1159 aa21.78■■□□□ 1.08
PDLIM3-202ENST00000284770 FERMT3Q86UX7 667 aa21.78■■□□□ 1.08
PDLIM3-202ENST00000284770 ZNF784Q8NCA9 323 aaPredicted RBP21.78■■□□□ 1.08
PDLIM3-202ENST00000284770 WNK4Q96J92 1243 aa21.78■■□□□ 1.08
PDLIM3-202ENST00000284770 RANBP17Q9H2T7 1088 aaKnown RBP21.78■■□□□ 1.08
PDLIM3-202ENST00000284770 USP17L15C9J2P7 530 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 USP17L13C9JLJ4 530 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 USP17L11C9JVI0 530 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 USP17L18D6R9N7 530 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 USP17L22D6RA61 530 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 USP17L17D6RBQ6 530 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 USP17L19D6RCP7 530 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 USP17L20D6RJB6 530 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 USP17L24Q0WX57 530 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 SNAPC2Q13487 334 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 SAFBQ15424 915 aaKnown RBP eCLIP21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 CCDC148Q8NFR7 591 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 CCDC12Q8WUD4 166 aaPredicted RBP21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 ZSCAN16Q9H4T2 348 aaPredicted RBP21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 PPP1R9AQ9ULJ8 1098 aa21.77■■□□□ 1.08
PDLIM3-202ENST00000284770 SNAP25P60880 206 aa21.76■■□□□ 1.07
PDLIM3-202ENST00000284770 SAPCD2Q86UD0 394 aa21.76■■□□□ 1.07
PDLIM3-202ENST00000284770 CHAMP1Q96JM3 812 aa21.76■■□□□ 1.07
PDLIM3-202ENST00000284770 PTPRFP10586 1907 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms