RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 SCN9AQ15858 1988 aa12.68□□□□□ -0.38
MSH3-201ENST00000265081 STX10O60499 249 aa12.68□□□□□ -0.38
MSH3-201ENST00000265081 NLRP5P59047 1200 aa12.68□□□□□ -0.38
MSH3-201ENST00000265081 IQUBQ8NA54 791 aa12.68□□□□□ -0.38
MSH3-201ENST00000265081 MAGEF1Q9HAY2 307 aa12.68□□□□□ -0.38
MSH3-201ENST00000265081 FANCGO15287 622 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 DHX58Q96C10 678 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 CCDC34Q96HJ3 373 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 PANX2Q96RD6 677 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 TSPY3P0CV98 308 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 TSPY8P0CW00 308 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 FKBP1AP62942 108 aaKnown RBP12.67□□□□□ -0.38
MSH3-201ENST00000265081 COA1Q9GZY4 146 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 KBTBD4Q9NVX7 518 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 SLX4Q8IY92 1834 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 SYNRGQ9UMZ2 1314 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 RBBP6Q7Z6E9 1792 aaKnown RBP12.67□□□□□ -0.38
MSH3-201ENST00000265081 ARHGAP6O43182 974 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 KLRC4O43908 158 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 MRIQ9BWK5 157 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 ZNF658Q5TYW1 1059 aaPredicted RBP12.67□□□□□ -0.38
MSH3-201ENST00000265081 AMOTL1Q8IY63 956 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 CUEDC2Q9H467 287 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 DISC1Q9NRI5 854 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 FAM53CQ9NYF3 392 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 DAGLAQ9Y4D2 1042 aa12.67□□□□□ -0.38
MSH3-201ENST00000265081 EDIL3O43854 480 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 SERPINC1P01008 464 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 TOP1P11387 765 aaKnown RBP12.66□□□□□ -0.38
MSH3-201ENST00000265081 CNNM4Q6P4Q7 775 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 SLC44A5Q8NCS7 719 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 LRRC15Q8TF66 581 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 MTMR8Q96EF0 704 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 AK8Q96MA6 479 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 GPR101Q96P66 508 aaPredicted RBP12.66□□□□□ -0.38
MSH3-201ENST00000265081 SAMSN1Q9NSI8 373 aaKnown RBP12.66□□□□□ -0.38
MSH3-201ENST00000265081 VWA3AA6NCI4 1184 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 RBM10P98175 930 aaKnown RBP12.66□□□□□ -0.38
MSH3-201ENST00000265081 ZNF827Q17R98 1081 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 EYA3Q99504 573 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 CCDC94Q9BW85 323 aaPredicted RBP12.66□□□□□ -0.38
MSH3-201ENST00000265081 JAG2Q9Y219 1238 aa12.66□□□□□ -0.38
MSH3-201ENST00000265081 CFAP100Q494V2 611 aa12.65□□□□□ -0.38
MSH3-201ENST00000265081 PPP1R18Q6NYC8 613 aa12.65□□□□□ -0.38
MSH3-201ENST00000265081 MAPKAPK5Q8IW41 473 aa12.65□□□□□ -0.38
MSH3-201ENST00000265081 CTAGE1Q96RT6 745 aa12.65□□□□□ -0.38
MSH3-201ENST00000265081 PPEF1O14829 653 aaPredicted RBP12.65□□□□□ -0.38
MSH3-201ENST00000265081 CLK2P49760 499 aaKnown RBP12.65□□□□□ -0.38
MSH3-201ENST00000265081 GPKOWQ92917 476 aaPredicted RBP eCLIP12.65□□□□□ -0.38
MSH3-201ENST00000265081 NAA15Q9BXJ9 866 aaKnown RBP12.65□□□□□ -0.38
MSH3-201ENST00000265081 EHD4Q9H223 541 aa12.65□□□□□ -0.38
MSH3-201ENST00000265081 MKNK2Q9HBH9 465 aa12.65□□□□□ -0.38
MSH3-201ENST00000265081 MYH7BA7E2Y1 1941 aa12.65□□□□□ -0.38
MSH3-201ENST00000265081 SRGNP10124 158 aa12.65□□□□□ -0.38
MSH3-201ENST00000265081 TEX11Q8IYF3 940 aa12.65□□□□□ -0.38
MSH3-201ENST00000265081 ZNF444Q8N0Y2 327 aaPredicted RBP12.65□□□□□ -0.38
MSH3-201ENST00000265081 RHOBTB3O94955 611 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 CERS5Q8N5B7 392 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 IGSF22Q8N9C0 903 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 KIF18AQ8NI77 898 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 TSC1Q92574 1164 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 ERO1AQ96HE7 468 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 TMEM60Q9H2L4 133 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 RMND1Q9NWS8 449 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 MFSD14BQ5SR56 506 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 HHIPL2Q6UWX4 724 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 KRT25Q7Z3Z0 450 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 PDILTQ8N807 584 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 PLSCR1O15162 318 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 NPM3O75607 178 aaKnown RBP12.64□□□□□ -0.39
MSH3-201ENST00000265081 MCM7P33993 719 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 TRMT44Q8IYL2 757 aaKnown RBP12.64□□□□□ -0.39
MSH3-201ENST00000265081 CEP95Q96GE4 821 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 MTMR9Q96QG7 549 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 MTMR4Q9NYA4 1195 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 SWAP70Q9UH65 585 aa12.64□□□□□ -0.39
MSH3-201ENST00000265081 KLRF2D3W0D1 207 aa12.63□□□□□ -0.39
MSH3-201ENST00000265081 PDHBP11177 359 aa12.63□□□□□ -0.39
MSH3-201ENST00000265081 HOXA7P31268 230 aaPredicted RBP12.63□□□□□ -0.39
MSH3-201ENST00000265081 FOXR2Q6PJQ5 311 aa12.63□□□□□ -0.39
MSH3-201ENST00000265081 ADSSL1Q8N142 457 aa12.63□□□□□ -0.39
MSH3-201ENST00000265081 CCDC12Q8WUD4 166 aaPredicted RBP12.63□□□□□ -0.39
MSH3-201ENST00000265081 GOLGA6L9A6NEM1 432 aa12.63□□□□□ -0.39
MSH3-201ENST00000265081 RPN1P04843 607 aaKnown RBP12.63□□□□□ -0.39
MSH3-201ENST00000265081 ETF1P62495 437 aaKnown RBP12.63□□□□□ -0.39
MSH3-201ENST00000265081 CCDC51Q96ER9 411 aa12.63□□□□□ -0.39
MSH3-201ENST00000265081 ASPRV1Q53RT3 343 aa12.63□□□□□ -0.39
MSH3-201ENST00000265081 GIMAP8Q8ND71 665 aaPredicted RBP12.63□□□□□ -0.39
MSH3-201ENST00000265081 PARP1P09874 1014 aaKnown RBP12.62□□□□□ -0.39
MSH3-201ENST00000265081 HSPA1LP34931 641 aa12.62□□□□□ -0.39
MSH3-201ENST00000265081 IRF2BP1Q8IU81 584 aa12.62□□□□□ -0.39
MSH3-201ENST00000265081 KIFC2Q96AC6 838 aa12.62□□□□□ -0.39
MSH3-201ENST00000265081 NPR1P16066 1061 aa12.62□□□□□ -0.39
MSH3-201ENST00000265081 CASP1P29466 404 aa12.62□□□□□ -0.39
MSH3-201ENST00000265081 BAG1Q99933 345 aaPredicted RBP12.62□□□□□ -0.39
MSH3-201ENST00000265081 C7orf25Q9BPX7 421 aa12.62□□□□□ -0.39
MSH3-201ENST00000265081 GTPBP4Q9BZE4 634 aaKnown RBP12.62□□□□□ -0.39
MSH3-201ENST00000265081 SAP30BPQ9UHR5 308 aaKnown RBP12.62□□□□□ -0.39
MSH3-201ENST00000265081 PPP2R2CQ9Y2T4 447 aa12.62□□□□□ -0.39
MSH3-201ENST00000265081 FXR2P51116 673 aaKnown RBP eCLIP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms