RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 GNAQP50148 359 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 IKQ13123 557 aaPredicted RBP11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 C2orf69Q8N8R5 385 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 OPTNQ96CV9 577 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 SLC10A4Q96EP9 437 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 GMCL1Q96IK5 515 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 PIGSQ96S52 555 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 SH2D4AQ9H788 454 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 JMJD4Q9H9V9 463 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 AS3MTQ9HBK9 375 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 FBXO28Q9NVF7 368 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 SMCHD1A6NHR9 2005 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 STX6O43752 255 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 AKAP17AQ02040 695 aaKnown RBP11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 MKRN3Q13064 507 aaKnown RBP11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 GPATCH4Q5T3I0 446 aaKnown RBP11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 ERO1BQ86YB8 467 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 TRIM22Q8IYM9 498 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 ZNF784Q8NCA9 323 aaPredicted RBP11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 GPKOWQ92917 476 aaPredicted RBP eCLIP11.28□□□□□ -0.62e-8■□□□□ 11.2
SNRNP40-201ENST00000263694 CHAMP1Q96JM3 812 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 SPZ1Q9BXG8 430 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 RNF26Q9BY78 433 aaPredicted RBP11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 RIOX1Q9H6W3 641 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 CHMP5Q9NZZ3 219 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 STK36Q9NRP7 1315 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 SPDYE5A6NIY4 337 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 DEXIO95424 95 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 TAL1P17542 331 aaPredicted RBP11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 VCAM1P19320 739 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 PPATQ06203 517 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 FERMT3Q86UX7 667 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 LZTS2Q9BRK4 669 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 RPAP3Q9H6T3 665 aaPredicted RBP11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 VPS54Q9P1Q0 977 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 SYNPO2Q9UMS6 1093 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 KCNJ14Q9UNX9 436 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 MTMR6Q9Y217 621 aa11.27□□□□□ -0.61
SNRNP40-201ENST00000263694 PASKQ96RG2 1323 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 C19orf81C9J6K1 198 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 ADAMTS3O15072 1205 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 PPP1R11O60927 126 aaPredicted RBP11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 USP14P54578 494 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 FOXD4L6Q3SYB3 417 aaPredicted RBP11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 TREML2Q5T2D2 321 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 SYDE2Q5VT97 1194 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 KRT40Q6A162 431 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 FOXD4L3Q6VB84 417 aaPredicted RBP11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 SMC1BQ8NDV3 1235 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 KIFC2Q96AC6 838 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 COA7Q96BR5 231 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 RRP36Q96EU6 259 aaKnown RBP11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 C8orf76Q96K31 380 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 TANGO6Q9C0B7 1094 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 PRR12Q9ULL5 1215 aa11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 CIZ1Q9ULV3 898 aaPredicted RBP11.26□□□□□ -0.61
SNRNP40-201ENST00000263694 H3BQV1 296 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 WDR46O15213 610 aaKnown RBP11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 BRD1O95696 1058 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 SCG2P13521 617 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 SMARCA1P28370 1054 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 STAT2P52630 851 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 HUNKP57058 714 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 FKBP1BP68106 108 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 PPIL2Q13356 520 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 PFKFB3Q16875 520 aaPredicted RBP11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 QRICH1Q2TAL8 776 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 IFFO2Q5TF58 517 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 WWC2Q6AWC2 1192 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 TYW1BQ6NUM6 668 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 BTNL9Q6UXG8 535 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 GADL1Q6ZQY3 521 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 HEATR3Q7Z4Q2 680 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 FBXO18Q8NFZ0 1043 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 LPAR1Q92633 364 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 TMOD4Q9NZQ9 345 aa11.25□□□□□ -0.61
SNRNP40-201ENST00000263694 TOMM70O94826 608 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 ZSCAN22P10073 491 aaPredicted RBP11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 PDCP20941 246 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 CDC37Q16543 378 aaPredicted RBP11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 SH3D19Q5HYK7 790 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 MCTP1Q6DN14 999 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 FAM173BQ6P4H8 233 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 CCDC174Q6PII3 467 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 WASF1Q92558 559 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 MTMR8Q96EF0 704 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 WNK4Q96J92 1243 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 SEC63Q9UGP8 760 aaKnown RBP11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 FEM1BQ9UK73 627 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 KCNH4Q9UQ05 1017 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 KIF3AQ9Y496 699 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 PARP14Q460N5 1801 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 RLFQ13129 1914 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 A0A0G2JLL6 359 aaPredicted RBP11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 PNMA6FA0A0J9YX94 578 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 KIF28PB7ZC32 967 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 STXBP3O00186 592 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 ZBTB5O15062 677 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 FLOT1O75955 427 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 NUCB2P80303 420 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms