RNA–Protein interactions for RNA: ENST00000260054.8

CCDC90B-201, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 2

Gene CCDC90B, Length 1,688 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-201ENST00000260054 USP17L13C9JLJ4 530 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 USP17L11C9JVI0 530 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 USP17L18D6R9N7 530 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 USP17L22D6RA61 530 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 USP17L17D6RBQ6 530 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 USP17L19D6RCP7 530 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 USP17L20D6RJB6 530 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 HOXA7P31268 230 aaPredicted RBP18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 USP17L24Q0WX57 530 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 CPLX2Q6PUV4 134 aaKnown RBP18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 ADGRF4Q8IZF3 695 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 PTPN18Q99952 460 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 RIOX1Q9H6W3 641 aa18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 BAZ2BQ9UIF8 2168 aaKnown RBP18.35■□□□□ 0.53
CCDC90B-201ENST00000260054 PTPDC1A2A3K4 754 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 MANSC4A6NHS7 340 aaPredicted RBP18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 BTBD19C9JJ37 291 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 FLOT1O75955 427 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 SMARCA1P28370 1054 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 SYDE2Q5VT97 1194 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 SAMD1Q6SPF0 538 aaPredicted RBP18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 FAM160B2Q86V87 743 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 SMARCC2Q8TAQ2 1214 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 CHURC1Q8WUH1 139 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 KIFC2Q96AC6 838 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 CAPNS2Q96L46 248 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 SLF1Q9BQI6 1058 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 LLPHQ9BRT6 129 aaKnown RBP18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 VAT1LQ9HCJ6 419 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 FOXD4L1Q9NU39 408 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 PRR12Q9ULL5 1215 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 hCG_1642624A0A1W2PR95 340 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 CDKL5O76039 1030 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 C1QTNF8P60827 252 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 FAM43AQ8N2R8 423 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 PIBF1Q8WXW3 757 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 INTS4Q96HW7 963 aaKnown RBP18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 SLC26A6Q9BXS9 759 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 JMJD4Q9H9V9 463 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 PPP1R9AQ9ULJ8 1098 aa18.34■□□□□ 0.53
CCDC90B-201ENST00000260054 RLFQ13129 1914 aa18.33■□□□□ 0.53
CCDC90B-201ENST00000260054 FMNL1O95466 1100 aaPredicted RBP18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 FDPSP14324 419 aaKnown RBP18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 ANKRD23Q86SG2 305 aa18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 PRPF38AQ8NAV1 312 aaKnown RBP18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 SPRYD3Q8NCJ5 442 aa18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 DDX11Q96FC9 970 aa18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 PIGSQ96S52 555 aa18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 V9GY48 417 aaPredicted RBP18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 PARP14Q460N5 1801 aa18.33■□□□□ 0.52
CCDC90B-201ENST00000260054 AOC2O75106 756 aa18.32■□□□□ 0.52
CCDC90B-201ENST00000260054 DSG3P32926 999 aa18.32■□□□□ 0.52
CCDC90B-201ENST00000260054 SNAP25P60880 206 aa18.32■□□□□ 0.52
CCDC90B-201ENST00000260054 KIF23Q02241 960 aaPredicted RBP18.32■□□□□ 0.52
CCDC90B-201ENST00000260054 NOGQ13253 232 aa18.32■□□□□ 0.52
CCDC90B-201ENST00000260054 COG2Q14746 738 aa18.32■□□□□ 0.52
CCDC90B-201ENST00000260054 MTMR8Q96EF0 704 aa18.32■□□□□ 0.52
CCDC90B-201ENST00000260054 RNF26Q9BY78 433 aaPredicted RBP18.32■□□□□ 0.52
CCDC90B-201ENST00000260054 ASCC2Q9H1I8 757 aaPredicted RBP18.32■□□□□ 0.52
CCDC90B-201ENST00000260054 SPDYE16A6NNV3 312 aaPredicted RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 PDHXO00330 501 aa18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 IGF2BP3O00425 579 aaKnown RBP eCLIP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 PRPF3O43395 683 aaKnown RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 HSP90AA1P07900 732 aaKnown RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 IRX3P78415 501 aaPredicted RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 SSRP1Q08945 709 aaKnown RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 PABPC4Q13310 644 aaKnown RBP eCLIP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 HOMER1Q86YM7 354 aa18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 ATG4CQ96DT6 458 aa18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 SLC45A1Q9Y2W3 748 aa18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 STK36Q9NRP7 1315 aa18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 HSPA6P17066 643 aa18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 PKN1Q16512 942 aa18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 CDC37Q16543 378 aaPredicted RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 TRIM22Q8IYM9 498 aa18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 RRP36Q96EU6 259 aaKnown RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 P2RX7Q99572 595 aaKnown RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 RANBP17Q9H2T7 1088 aaKnown RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 ORC3Q9UBD5 711 aaPredicted RBP18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 ADAMTS5Q9UNA0 930 aa18.31■□□□□ 0.52
CCDC90B-201ENST00000260054 MYPNQ86TC9 1320 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 WDR33Q9C0J8 1336 aaKnown RBP18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 VWA5AO00534 786 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 ZBTB5O15062 677 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 CYP2C8P10632 490 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 OSBPP22059 807 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 GJB2P29033 226 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 VEGFBP49765 207 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 INHBEP58166 350 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 HMGN5P82970 282 aaKnown RBP18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 SREBF2Q12772 1141 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 QRICH1Q2TAL8 776 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 POTEEQ6S8J3 1075 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 IFNL1Q8IU54 200 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 HOXC10Q9NYD6 342 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 SMC3Q9UQE7 1217 aa18.3■□□□□ 0.52
CCDC90B-201ENST00000260054 PPP1R11O60927 126 aaPredicted RBP18.29■□□□□ 0.52
CCDC90B-201ENST00000260054 TM4SF4P48230 202 aa18.29■□□□□ 0.52
CCDC90B-201ENST00000260054 HERVK_113P62684 666 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms