RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Cpb1B2RS76 415 aa17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Pagr1bF6V0H0 108 aa17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Nmt2O70311 529 aa17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Cyp7b1Q60991 507 aa17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Panx2Q6IMP4 677 aa17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Dhx40Q6PE54 779 aaKnown RBP17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Kcnf1Q7TSH7 493 aa17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Spats2Q8K1N4 545 aaKnown RBP17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Slc18a1Q8R090 521 aa17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Pagr1aQ99L02 253 aa17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Ndufab1Q9CR21 156 aa17.22■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Dnajc21E9Q8D0 531 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Traf1P39428 409 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 XpcP51612 930 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Trappc10Q3TLI0 1259 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Enox1Q8BHR2 643 aaKnown RBP17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Ints4Q8CIM8 964 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 AdgbG3UZ78 1657 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Eftud2O08810 971 aaKnown RBP17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Kiaa1468Q148V7 1216 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Large1Q9Z1M7 756 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 KhnynQ80U38 671 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Cd209bQ8CJ91 325 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Nek9Q8K1R7 984 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Lbhd1A0A087WPA0 259 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Klhl34A2AI76 644 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Rasal2E9PW37 1286 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Enc1O35709 589 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Fkbp3Q62446 224 aaKnown RBP17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 GnptabQ69ZN6 1235 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Haus7Q8BKT8 364 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Alx1Q8C8B0 326 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Pym1Q8CHP5 203 aaKnown RBP17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Nr2e3Q9QXZ7 395 aa17.21■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Tom1l2Q5SRX1 507 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Pramel6Q810Y9 485 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Tnip1Q9WUU8 647 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Stxbp3Q60770 592 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Tmem191cQ9JJB1 302 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Foxo4Q9WVH3 505 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Lin9Q8C735 542 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ccdc152E9PX14 254 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Vps33bP59016 617 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Krt87Q6IMF0 495 aa17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 HdlbpQ8VDJ3 1268 aaKnown RBP17.2■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Mex3cQ05A36 652 aaKnown RBP17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Nxf1Q99JX7 618 aaKnown RBP17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Galnt15Q9D2N8 638 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Acot10Q32MW3 439 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Slfnl1Q8BHW9 410 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Strip1Q8C079 837 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Rnf123Q5XPI3 1314 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Usp50Q6P8X6 390 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Lrsam1Q80ZI6 727 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Trip6Q9Z1Y4 480 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Gm5935Q497S0 212 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 MmeQ61391 750 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 TfrcQ62351 763 aaKnown RBP17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Armc9Q9D2I5 817 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Tktl2Q9D4D4 627 aa17.19■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 EsrrbQ61539 433 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Fam102bQ8BQS4 339 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Gm5580A0A0N4SVP8 411 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ccdc170D3YXL0 722 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Jade3Q6IE82 823 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Armcx3Q8BHS6 379 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Asic2Q925H0 512 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 MbipQ99LQ1 341 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Sar1bQ9CQC9 198 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Krt7Q9DCV7 457 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Eef2P58252 858 aaKnown RBP17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Senp1P59110 640 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Cyp4x1Q6A152 507 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Sval3Q76I99 144 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Micall1Q8BGT6 870 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Anks1bQ8BIZ1 1259 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Synpo2Q91YE8 1087 aaKnown RBP17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Tmco5aQ9D9D5 303 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ddx49Q4FZF3 480 aaKnown RBP17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Kctd1Q5M956 257 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Trim6Q8BGE7 488 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Kctd10Q922M3 315 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ndufb9Q9CQJ8 179 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Tulp1Q9Z273 543 aa17.18■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Krt78E9Q0F0 1068 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Prkg1P0C605 671 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Clec16aQ80U30 1036 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Slx1bQ8BX32 270 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 SncbQ91ZZ3 133 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Tubgcp6G5E8P0 1769 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Casp12O08736 419 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ap1b1O35643 943 aaKnown RBP17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 VimP20152 466 aaKnown RBP17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Cyp2d10P24456 504 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 RubcnlQ3TD16 648 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Ccdc25Q78PG9 208 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Hirip3Q8BLH7 601 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Fam217aQ9D9W6 419 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 Gucy1a3Q9ERL9 691 aa17.17■□□□□ 0.34
Ccdc88b-201ENSMUST00000113440 RabggtaQ9JHK4 567 aa17.17■□□□□ 0.34
Retrieved 100 of 22,080 RNA–protein pairs in 17 ms