RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Sec62Q8BU14 398 aaKnown RBP13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Nrbp2Q91V36 499 aa13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Ccdc121E9Q6D3 323 aa13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Idh1O88844 414 aaKnown RBP13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Krt14Q61781 484 aa13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Kbtbd13Q8C828 458 aa13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Smc1aQ9CU62 1233 aaKnown RBP13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Tpd52l2Q9CYZ2 220 aaKnown RBP13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 GdaQ9R111 454 aa13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Otud7bB2RUR8 840 aa13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Usp50Q6P8X6 390 aa13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Zfp341Q6PGC9 846 aa13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Slc12a8Q8VI23 705 aa13.18□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Surf1P09925 306 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Senp1P59110 640 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Fkbp3Q62446 224 aaKnown RBP13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Dnaaf2Q8BPI1 814 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Scfd1Q8BRF7 639 aaKnown RBP13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Bcl2l12Q9D3J3 255 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Tmem47Q9JJG6 181 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Vmn2r23E9PXI5 849 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Slc10a4Q3UEZ8 437 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 DeptorQ570Y9 409 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Vat1lQ80TB8 417 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 SowahdQ8BY98 327 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Pcdhb2Q91Y00 799 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Saal1Q9D2C2 474 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Cbx1P83917 185 aaKnown RBP13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Churc1Q6DG52 112 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Spata21Q8BHW6 681 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Slc39a11Q8BWY7 342 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Apol10aQ8CCA5 318 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Rbm41Q8JZV4 413 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Sulf1Q8K007 870 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Ppp2r5dQ91V89 594 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Smc1bQ920F6 1248 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Rasal2E9PW37 1286 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Q3UJP5 209 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 IarsQ8BU30 1262 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Cyp3a25O09158 503 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 CtcfQ61164 736 aaKnown RBP13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Snrnp35Q9D384 244 aa13.17□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Snai1Q02085 264 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Top1Q04750 767 aaKnown RBP13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Rbm6S4R1W5 1118 aaKnown RBP13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Ankrd63A2ARS0 390 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 DesP31001 469 aaKnown RBP13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Mapk4Q6P5G0 583 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Ubxn10Q8BG34 277 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Magea6O89010 325 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Frat1P70339 274 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Mcm6P97311 821 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Magea3Q6T340 320 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Armcx3Q8BHS6 379 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Caps2Q8BUG5 550 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Def6Q8C2K1 630 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Scyl2Q8CFE4 930 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Rfc4Q99J62 364 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Cep19Q9CQA8 163 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 AacsQ9D2R0 672 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Glis3Q6XP49 780 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Crybg3Q80W49 1005 aa13.16□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Sik3Q6P4S6 1311 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Jade3Q6IE82 823 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Serpinb13Q8CDC0 389 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Lman1lQ8VCD3 505 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Gm2030D3Z7C4 212 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Hoxa13Q62424 386 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Ireb2Q811J3 963 aaKnown RBP13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Spef2Q8C9J3 1734 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Specc1lQ2KN98 1118 aaKnown RBP13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Pcdha12Q91Y18 950 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Mdc1Q5PSV9 1707 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Gucy1b3O54865 620 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Rbm12b2Q66JV4 834 aaKnown RBP13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Zbtb39Q6PDK0 712 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 Usp21Q9QZL6 566 aa13.15□□□□□ -0.3
Pcif1-201ENSMUST00000041643 PrkcshO08795 521 aa13.15□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Dact3Q0PHV7 610 aa13.15□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Mettl24Q8CCB5 363 aa13.15□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Slit1Q80TR4 1531 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Topaz1E5FYH1 1653 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Kmt5aQ2YDW7 349 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Hps3Q91VB4 1002 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Mrpl11Q9CQF0 192 aaKnown RBP13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Mtmr7Q9Z2C9 660 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Krt78E9Q0F0 1068 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Sept2P42208 361 aaKnown RBP13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Kcnq3Q8K3F6 873 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Ces1Q8VCC2 565 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 ByslO54825 436 aaKnown RBP13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Atp11aP98197 1187 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Chrna5Q2MKA5 467 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Gm5935Q497S0 212 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Anp32cQ64G17 123 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Trak2Q6P9N8 913 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Ublcp1Q8BGR9 318 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Ttc27Q8CD92 847 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Bicdl2Q8CHW5 507 aa13.14□□□□□ -0.31
Pcif1-201ENSMUST00000041643 Lmbrd1Q8K0B2 537 aa13.14□□□□□ -0.31
Retrieved 100 of 22,080 RNA–protein pairs in 36.6 ms