RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 LONRF3Q496Y0 759 aa17.27■□□□□ 0.36
TRIM3-215ENST00000639856 KRBA2Q6ZNG9 492 aa17.27■□□□□ 0.36
TRIM3-215ENST00000639856 ELOA2Q8IYF1 753 aaPredicted RBP17.27■□□□□ 0.36
TRIM3-215ENST00000639856 MRIQ9BWK5 157 aa17.27■□□□□ 0.36
TRIM3-215ENST00000639856 CABP5Q9NP86 173 aa17.27■□□□□ 0.36
TRIM3-215ENST00000639856 AKR1B1P15121 316 aa17.27■□□□□ 0.35
TRIM3-215ENST00000639856 KRT2P35908 639 aa17.27■□□□□ 0.35
TRIM3-215ENST00000639856 HDLBPQ00341 1268 aaKnown RBP17.27■□□□□ 0.35
TRIM3-215ENST00000639856 CCDC178Q5BJE1 867 aa17.27■□□□□ 0.35
TRIM3-215ENST00000639856 METTL16Q86W50 562 aaKnown RBP17.27■□□□□ 0.35
TRIM3-215ENST00000639856 ZNF579Q8NAF0 562 aaKnown RBP17.27■□□□□ 0.35
TRIM3-215ENST00000639856 CNNM3Q8NE01 707 aa17.27■□□□□ 0.35
TRIM3-215ENST00000639856 MTFR1LQ9H019 292 aa17.27■□□□□ 0.35
TRIM3-215ENST00000639856 PPP1R1BQ9UD71 204 aaPredicted RBP17.27■□□□□ 0.35
TRIM3-215ENST00000639856 FAM198AQ9UFP1 575 aa17.27■□□□□ 0.35
TRIM3-215ENST00000639856 MAD2L2Q9UI95 211 aa17.27■□□□□ 0.35
TRIM3-215ENST00000639856 SERPINB13Q9UIV8 391 aa17.27■□□□□ 0.35
TRIM3-215ENST00000639856 SERPINA10Q9UK55 444 aa17.27■□□□□ 0.35
TRIM3-215ENST00000639856 BRCA1P38398 1863 aaKnown RBP17.26■□□□□ 0.35
TRIM3-215ENST00000639856 SMTNL1A8MU46 457 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 VEGFAP15692 232 aaPredicted RBP17.26■□□□□ 0.35
TRIM3-215ENST00000639856 KIF5BP33176 963 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 PNOCQ13519 176 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 GRM4Q14833 912 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 GRIPAP1Q4V328 841 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 CLEC10AQ8IUN9 316 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 CACTINQ8WUQ7 758 aaKnown RBP17.26■□□□□ 0.35
TRIM3-215ENST00000639856 FAM13BQ9NYF5 915 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 SRPRBQ9Y5M8 271 aaKnown RBP17.26■□□□□ 0.35
TRIM3-215ENST00000639856 MORC2Q9Y6X9 1032 aaPredicted RBP17.26■□□□□ 0.35
TRIM3-215ENST00000639856 UQCRHLA0A096LP55 91 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 UQCRHP07919 91 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 POLD1P28340 1107 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 SHMT1P34896 483 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 TPM4P67936 248 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 GRIN1Q05586 938 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 NCAPHQ15003 741 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 SLC35G1Q2M3R5 365 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 SPECC1Q5M775 1068 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 PIM2Q9P1W9 311 aa17.26■□□□□ 0.35
TRIM3-215ENST00000639856 PSMD14O00487 310 aa17.25■□□□□ 0.35
TRIM3-215ENST00000639856 IKBKBO14920 756 aa17.25■□□□□ 0.35
TRIM3-215ENST00000639856 CFAP100Q494V2 611 aa17.25■□□□□ 0.35
TRIM3-215ENST00000639856 PRIMPOLQ96LW4 560 aa17.25■□□□□ 0.35
TRIM3-215ENST00000639856 TDRD3Q9H7E2 651 aaKnown RBP17.25■□□□□ 0.35
TRIM3-215ENST00000639856 DDTLA6NHG4 134 aaPredicted RBP17.24■□□□□ 0.35
TRIM3-215ENST00000639856 FAM196BA6NMK8 535 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 NEMFO60524 1076 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 GOLGA8HP0CJ92 632 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 TGFB2P61812 414 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 ISM2Q6H9L7 571 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 SH3BP5LQ7L8J4 393 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 LRRC8AQ8IWT6 810 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 PRMT6Q96LA8 375 aaPredicted RBP17.24■□□□□ 0.35
TRIM3-215ENST00000639856 DNAJC18Q9H819 358 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 HOOK1Q9UJC3 728 aaKnown RBP17.24■□□□□ 0.35
TRIM3-215ENST00000639856 PLIN4Q96Q06 1357 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 TRIM75PA6NK02 468 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 HLA-DOAP06340 250 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 ATP2B1P20020 1258 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 EIF6P56537 245 aaKnown RBP17.24■□□□□ 0.35
TRIM3-215ENST00000639856 MDM2Q00987 491 aaPredicted RBP17.24■□□□□ 0.35
TRIM3-215ENST00000639856 FOXP4Q8IVH2 680 aaPredicted RBP17.24■□□□□ 0.35
TRIM3-215ENST00000639856 IDI2Q9BXS1 227 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 CPVLQ9H3G5 476 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 BRMS1Q9HCU9 246 aa17.24■□□□□ 0.35
TRIM3-215ENST00000639856 ZBTB12Q9Y330 459 aaPredicted RBP17.24■□□□□ 0.35
TRIM3-215ENST00000639856 FAM205CA6NFA0 338 aa17.23■□□□□ 0.35
TRIM3-215ENST00000639856 NPY5RQ15761 445 aa17.23■□□□□ 0.35
TRIM3-215ENST00000639856 RSBN1LQ6PCB5 846 aaPredicted RBP17.23■□□□□ 0.35
TRIM3-215ENST00000639856 PCDHA5Q9Y5H7 936 aa17.23■□□□□ 0.35
TRIM3-215ENST00000639856 POLR2DO15514 142 aaKnown RBP17.23■□□□□ 0.35
TRIM3-215ENST00000639856 CYTH3O43739 400 aa17.23■□□□□ 0.35
TRIM3-215ENST00000639856 TOP1P11387 765 aaKnown RBP17.23■□□□□ 0.35
TRIM3-215ENST00000639856 SCG2P13521 617 aa17.23■□□□□ 0.35
TRIM3-215ENST00000639856 NOVP48745 357 aa17.23■□□□□ 0.35
TRIM3-215ENST00000639856 PFKFB3Q16875 520 aaPredicted RBP17.23■□□□□ 0.35
TRIM3-215ENST00000639856 EARS2Q5JPH6 523 aaKnown RBP17.23■□□□□ 0.35
TRIM3-215ENST00000639856 MTMR4Q9NYA4 1195 aa17.23■□□□□ 0.35
TRIM3-215ENST00000639856 SWAP70Q9UH65 585 aa17.23■□□□□ 0.35
TRIM3-215ENST00000639856 FER1L6Q2WGJ9 1857 aa17.22■□□□□ 0.35
TRIM3-215ENST00000639856 PSDA5PKW4 1024 aaPredicted RBP17.22■□□□□ 0.35
TRIM3-215ENST00000639856 PALM3A6NDB9 673 aaPredicted RBP17.22■□□□□ 0.35
TRIM3-215ENST00000639856 VIL1P09327 827 aaKnown RBP17.22■□□□□ 0.35
TRIM3-215ENST00000639856 SHROOM1Q2M3G4 852 aaPredicted RBP17.22■□□□□ 0.35
TRIM3-215ENST00000639856 DALRD3Q5D0E6 543 aaKnown RBP17.22■□□□□ 0.35
TRIM3-215ENST00000639856 USP17L2Q6R6M4 530 aa17.22■□□□□ 0.35
TRIM3-215ENST00000639856 ZSCAN29Q8IWY8 852 aaPredicted RBP17.22■□□□□ 0.35
TRIM3-215ENST00000639856 GPKOWQ92917 476 aaPredicted RBP eCLIP17.22■□□□□ 0.35
TRIM3-215ENST00000639856 TNFRSF25Q93038 417 aa17.22■□□□□ 0.35
TRIM3-215ENST00000639856 GREB1LQ9C091 1923 aaPredicted RBP17.22■□□□□ 0.35
TRIM3-215ENST00000639856 IGKV6D-41A0A0C4DH26 115 aa17.21■□□□□ 0.35
TRIM3-215ENST00000639856 ADAMTS3O15072 1205 aa17.21■□□□□ 0.35
TRIM3-215ENST00000639856 BMP15O95972 392 aa17.21■□□□□ 0.35
TRIM3-215ENST00000639856 NOM1Q5C9Z4 860 aaKnown RBP17.21■□□□□ 0.35
TRIM3-215ENST00000639856 FILIP1Q7Z7B0 1213 aa17.21■□□□□ 0.35
TRIM3-215ENST00000639856 LRRC47Q8N1G4 583 aaKnown RBP17.21■□□□□ 0.35
TRIM3-215ENST00000639856 GMLQ99445 158 aa17.21■□□□□ 0.35
TRIM3-215ENST00000639856 XPO4Q9C0E2 1151 aaKnown RBP17.21■□□□□ 0.35
TRIM3-215ENST00000639856 CSRNP2Q9H175 543 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms