RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 BAZ2AQ9UIF9 1905 aaKnown RBP22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 ORC4O43929 436 aa22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 SCG2P13521 617 aa22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 ZNF658Q5TYW1 1059 aaPredicted RBP22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 CTR9Q6PD62 1173 aa22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 SRBD1Q8N5C6 995 aaKnown RBP22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 PUF60Q9UHX1 559 aaKnown RBP22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 NLRP5P59047 1200 aa22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 ERVK-24P63145 666 aa22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 TCP11X2Q5H9J9 407 aa22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 MUM1L1Q5H9M0 696 aa22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 ARL6IP4Q66PJ3 421 aaKnown RBP22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 SLC35F6Q8N357 371 aa22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 NAPGQ99747 312 aaPredicted RBP22.72■■□□□ 1.23
SYNGAP1-227ENST00000638142 CAVIN4Q5BKX8 364 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 PIK3AP1Q6ZUJ8 805 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 ACRBPQ8NEB7 543 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 MTRQ99707 1265 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 DOT1LQ8TEK3 1739 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 ZBTB22O15209 634 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 SLC20A2Q08357 652 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 WHAMMP3Q1A5X7 153 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 MSL3Q8N5Y2 521 aaKnown RBP22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 NELFBQ8WX92 580 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 NUP88Q99567 741 aaPredicted RBP22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 STRCQ7RTU9 1775 aa22.71■■□□□ 1.23
SYNGAP1-227ENST00000638142 KCNJ18B7U540 433 aa22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 ERLIN1O75477 346 aa22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 KCNJ12Q14500 433 aa22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 PFKFB3Q16875 520 aaPredicted RBP22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 VPS16Q9H269 839 aa22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 ZCCHC17Q9NP64 241 aaKnown RBP22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 COL14A1Q05707 1796 aaKnown RBP22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 RREB1Q92766 1687 aa22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 USP17L12C9JPN9 530 aa22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 USP17L21D6R901 530 aa22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 LONP1P36776 959 aaKnown RBP22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 PIP4K2BP78356 416 aa22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 BEND6Q5SZJ8 279 aaPredicted RBP22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 ANKRD18AQ8IVF6 992 aa22.7■■□□□ 1.22
SYNGAP1-227ENST00000638142 RPN1P04843 607 aaKnown RBP22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 MCM7P33993 719 aa22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 ST5P78524 1137 aa22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 IL17AQ16552 155 aa22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 NEK11Q8NG66 645 aa22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 TAB2Q9NYJ8 693 aa22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 TUBBP07437 444 aa22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 ATP6V1AP38606 617 aa22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 ARHGAP25P42331 645 aa22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 MYH8P13535 1937 aa22.69■■□□□ 1.22
SYNGAP1-227ENST00000638142 COL4A1P02462 1669 aa22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 A0A1B0GUL6 1792 aa22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 CALML3P27482 149 aa22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 HDXQ7Z353 690 aa22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 ZNF384Q8TF68 577 aa22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 TSPYL1Q9H0U9 437 aa22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 SCN7AQ01118 1682 aa22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 H7C1D1 291 aa22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 KRT9P35527 623 aa22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 BSDC1Q9NW68 430 aaPredicted RBP22.68■■□□□ 1.22
SYNGAP1-227ENST00000638142 MYH13Q9UKX3 1938 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 CTAGE15A4D2H0 777 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 COBLO75128 1261 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 CTAGE8P0CG41 777 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 GTF2E1P29083 439 aaPredicted RBP22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 CTAGE6Q86UF2 777 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 CTAGE4Q8IX94 777 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 EXOC4Q96A65 974 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 PNKPQ96T60 521 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 PSD3Q9NYI0 1048 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 RNF225M0QZC1 329 aaPredicted RBP22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 CAPN2P17655 700 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 TMED8Q6PL24 325 aaPredicted RBP22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 ZNF652Q9Y2D9 606 aa22.67■■□□□ 1.22
SYNGAP1-227ENST00000638142 CDC25AP30304 524 aa22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 KIF5BP33176 963 aa22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 BBXQ8WY36 941 aaPredicted RBP22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 FAM84BQ96KN1 310 aaPredicted RBP22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 GBP3Q9H0R5 595 aa22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 PRCPP42785 496 aa22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 UBXN1Q04323 297 aa22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 WWC2Q6AWC2 1192 aa22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 C4orf32Q8N8J7 132 aa22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 CRNKL1Q9BZJ0 848 aaKnown RBP22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 L1RE1Q9UN81 338 aa22.66■■□□□ 1.22
SYNGAP1-227ENST00000638142 WNK3Q9BYP7 1800 aa22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 LOC102724428A0A0B4J2F2 783 aa22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 H3BQF6 201 aa22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 NMT2O60551 498 aa22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 EIF3JO75822 258 aaKnown RBP22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 STAT6P42226 847 aa22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 SIK1P57059 783 aa22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 SF3B3Q15393 1217 aaKnown RBP22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 NSUN4Q96CB9 384 aaKnown RBP22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 DCP1AQ9NPI6 582 aaPredicted RBP22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 SH3GLB2Q9NR46 395 aa22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 ATP8A2Q9NTI2 1148 aa22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 LAMB1P07942 1786 aa22.65■■□□□ 1.22
SYNGAP1-227ENST00000638142 ABL1P00519 1130 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms