RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 CNOT11Q9UKZ1 510 aaKnown RBP3.04□□□□□ -1.92
SCN1A-215ENST00000637285 PCDHB5Q9Y5E4 795 aa3.04□□□□□ -1.92
SCN1A-215ENST00000637285 A0A1B0GTL3 188 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 SSU72P8A0A1W2PR75 194 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 RBM47A0AV96 593 aaKnown RBP3.03□□□□□ -1.92
SCN1A-215ENST00000637285 NUDT19A8MXV4 375 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 UPK3BL1B0FP48 263 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 UPK3BL2E5RIL1 263 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 PDE4BQ07343 736 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 KIR3DS1Q14943 382 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 ENOX2Q16206 610 aaKnown RBP3.03□□□□□ -1.92
SCN1A-215ENST00000637285 B4GALNT3Q6L9W6 998 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 CYB5D2Q8WUJ1 264 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 RNF141Q8WVD5 230 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 DDX1Q92499 740 aaKnown RBP3.03□□□□□ -1.92
SCN1A-215ENST00000637285 MAP6Q96JE9 813 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 SPATA25Q9BR10 227 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 MENTQ9BUN1 341 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 MRIQ9BWK5 157 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 FOXP3Q9BZS1 431 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 SRCIN1Q9C0H9 1055 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 SCAND2PQ9GZW5 306 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-215ENST00000637285 KLHL14Q9P2G3 628 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 PCDHA5Q9Y5H7 936 aa3.03□□□□□ -1.92
SCN1A-215ENST00000637285 FKTNO75072 461 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 PPP1R15AO75807 674 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-215ENST00000637285 CNR2P34972 360 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 KIR2DL1P43626 348 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-215ENST00000637285 KIR2DL2P43627 348 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-215ENST00000637285 ERVFRD-1P60508 538 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 RNF111Q6ZNA4 994 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 SV2BQ7L1I2 683 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 NLGN1Q8N2Q7 840 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 USHBP1Q8N6Y0 703 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 FAM13CQ8NE31 585 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 HHIPL1Q96JK4 782 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 KREMEN1Q96MU8 473 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 ASCC2Q9H1I8 757 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-215ENST00000637285 TTF2Q9UNY4 1162 aaKnown RBP3.02□□□□□ -1.93
SCN1A-215ENST00000637285 ZNF281Q9Y2X9 895 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 TACC3Q9Y6A5 838 aa3.02□□□□□ -1.93
SCN1A-215ENST00000637285 USP17L7P0C7H9 530 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 C6P13671 934 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 ARL4AP40617 200 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 RTP1P59025 263 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 TMEM62Q0P6H9 643 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 ZPBP2Q6X784 338 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 ZFPM1Q8IX07 1006 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 ANKRD24Q8TF21 1146 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 SETDB2Q96T68 719 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 SUSD2Q9UGT4 822 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 ADAM30Q9UKF2 790 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 CORINQ9Y5Q5 1042 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 TAF6LQ9Y6J9 622 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 DUSP10Q9Y6W6 482 aa3.01□□□□□ -1.93
SCN1A-215ENST00000637285 SLPIP03973 132 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 PRKCAP17252 672 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 PFKLP17858 780 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 PLCG1P19174 1290 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 GDF5P43026 501 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 MAPK8P45983 427 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 YARSP54577 528 aaKnown RBP3□□□□□ -1.93
SCN1A-215ENST00000637285 CHMP4BP1P59074 171 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 NMIQ13287 307 aaPredicted RBP3□□□□□ -1.93
SCN1A-215ENST00000637285 DSC3Q14574 896 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 MAP3K11Q16584 847 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 CPZQ66K79 652 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 GALNT18Q6P9A2 607 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 LIPIQ6XZB0 460 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 TCTN2Q96GX1 697 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 LOXL4Q96JB6 756 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 C8orf49Q96NF6 230 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 TCFL5Q9UL49 500 aa3□□□□□ -1.93
SCN1A-215ENST00000637285 TMEM82A0PJX8 343 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 GIPC1O14908 333 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 TREHO43280 583 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 ITGB3P05106 788 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 SYPP08247 313 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 ZNF20P17024 532 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 PCBP3P57721 371 aaKnown RBP2.99□□□□□ -1.93
SCN1A-215ENST00000637285 ZNF200P98182 395 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-215ENST00000637285 CYP4F8P98187 520 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 LAPTM5Q13571 262 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 CCDC85BQ15834 202 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-215ENST00000637285 HSF5Q4G112 596 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-215ENST00000637285 VWA3BQ502W6 1294 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 CRB2Q5IJ48 1285 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 NUP43Q8NFH3 380 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 FBF1Q8TES7 1133 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 ZNF526Q8TF50 670 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-215ENST00000637285 JARID2Q92833 1246 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-215ENST00000637285 ASPNQ9BXN1 380 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 MIR1-1HGQ9H1L0 117 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 SLITRK6Q9H5Y7 841 aa2.99□□□□□ -1.93
SCN1A-215ENST00000637285 BIN2Q9UBW5 565 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-215ENST00000637285 GPR55Q9Y2T6 319 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-215ENST00000637285 WTIPA6NIX2 430 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-215ENST00000637285 MSL3P1P0C860 447 aa2.98□□□□□ -1.93
SCN1A-215ENST00000637285 TACR2P21452 398 aa2.98□□□□□ -1.93
SCN1A-215ENST00000637285 IGFBP6P24592 240 aaPredicted RBP2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms