RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 TMTC3Q6ZXV5 915 aa23.96■■□□□ 1.43
CLN3-245ENST00000636172 SPICE1Q8N0Z3 855 aa23.96■■□□□ 1.43
CLN3-245ENST00000636172 NSUN7Q8NE18 718 aaKnown RBP23.96■■□□□ 1.43
CLN3-245ENST00000636172 OTUD5Q96G74 571 aa23.96■■□□□ 1.43
CLN3-245ENST00000636172 FRMPD2Q68DX3 1309 aaPredicted RBP23.96■■□□□ 1.43
CLN3-245ENST00000636172 ASPRV1Q53RT3 343 aa23.95■■□□□ 1.43
CLN3-245ENST00000636172 CMTR1Q8N1G2 835 aaKnown RBP23.95■■□□□ 1.43
CLN3-245ENST00000636172 NUP88Q99567 741 aaPredicted RBP23.95■■□□□ 1.43
CLN3-245ENST00000636172 LLPHQ9BRT6 129 aaKnown RBP23.95■■□□□ 1.43
CLN3-245ENST00000636172 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.95■■□□□ 1.43
CLN3-245ENST00000636172 JAK2O60674 1132 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 SLC1A4P43007 532 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 FUT2Q10981 343 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 DGKZQ13574 1117 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 CCDC96Q2M329 555 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 OPTNQ96CV9 577 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 SLC10A4Q96EP9 437 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 EMILIN3Q9NT22 766 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 PTPDC1A2A3K4 754 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 PPFIA3O75145 1194 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 USP14P54578 494 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 FSTL1Q12841 308 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 PPIL2Q13356 520 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 KCTD1Q719H9 257 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 NBPF11Q86T75 865 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 SRBD1Q8N5C6 995 aaKnown RBP23.94■■□□□ 1.42
CLN3-245ENST00000636172 SMARCC2Q8TAQ2 1214 aa23.94■■□□□ 1.42
CLN3-245ENST00000636172 C19orf81C9J6K1 198 aa23.93■■□□□ 1.42
CLN3-245ENST00000636172 KLRF2D3W0D1 207 aa23.93■■□□□ 1.42
CLN3-245ENST00000636172 IRF6O14896 467 aa23.93■■□□□ 1.42
CLN3-245ENST00000636172 BMP3P12645 472 aa23.93■■□□□ 1.42
CLN3-245ENST00000636172 IFNAR1P17181 557 aa23.93■■□□□ 1.42
CLN3-245ENST00000636172 GNAQP50148 359 aa23.93■■□□□ 1.42
CLN3-245ENST00000636172 SLC35G1Q2M3R5 365 aa23.93■■□□□ 1.42
CLN3-245ENST00000636172 GPATCH4Q5T3I0 446 aaKnown RBP23.93■■□□□ 1.42
CLN3-245ENST00000636172 CPLX2Q6PUV4 134 aaKnown RBP23.93■■□□□ 1.42
CLN3-245ENST00000636172 LPAR1Q92633 364 aa23.93■■□□□ 1.42
CLN3-245ENST00000636172 GPCPD1Q9NPB8 672 aa23.93■■□□□ 1.42
CLN3-245ENST00000636172 CDKL5O76039 1030 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 GJA5P36382 358 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 HMGCS2P54868 508 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 HUNKP57058 714 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 CCDC82Q8N4S0 544 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 PHKBQ93100 1093 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 CPVLQ9H3G5 476 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 KCNH4Q9UQ05 1017 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 SMC3Q9UQE7 1217 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 CNTNAP5Q8WYK1 1306 aa23.92■■□□□ 1.42
CLN3-245ENST00000636172 BAZ2BQ9UIF8 2168 aaKnown RBP23.92■■□□□ 1.42
CLN3-245ENST00000636172 SH3D19Q5HYK7 790 aa23.91■■□□□ 1.42
CLN3-245ENST00000636172 FAM83BQ5T0W9 1011 aa23.91■■□□□ 1.42
CLN3-245ENST00000636172 TTBK2Q6IQ55 1244 aa23.91■■□□□ 1.42
CLN3-245ENST00000636172 C12orf42Q96LP6 360 aa23.91■■□□□ 1.42
CLN3-245ENST00000636172 LZTS2Q9BRK4 669 aa23.91■■□□□ 1.42
CLN3-245ENST00000636172 ISY1Q9ULR0 285 aaKnown RBP23.91■■□□□ 1.42
CLN3-245ENST00000636172 LOC285556D6RIA3 1793 aa23.91■■□□□ 1.42
CLN3-245ENST00000636172 VCAM1P19320 739 aa23.9■■□□□ 1.42
CLN3-245ENST00000636172 SAPCD2Q86UD0 394 aa23.9■■□□□ 1.42
CLN3-245ENST00000636172 DDX11Q96FC9 970 aa23.9■■□□□ 1.42
CLN3-245ENST00000636172 WNK4Q96J92 1243 aa23.9■■□□□ 1.42
CLN3-245ENST00000636172 CXCL11O14625 94 aa23.89■■□□□ 1.42
CLN3-245ENST00000636172 WDR46O15213 610 aaKnown RBP23.89■■□□□ 1.42
CLN3-245ENST00000636172 CYTH3O43739 400 aa23.89■■□□□ 1.42
CLN3-245ENST00000636172 FMNL1O95466 1100 aaPredicted RBP23.89■■□□□ 1.42
CLN3-245ENST00000636172 FDPSP14324 419 aaKnown RBP23.89■■□□□ 1.42
CLN3-245ENST00000636172 GJB2P29033 226 aa23.89■■□□□ 1.42
CLN3-245ENST00000636172 SPZ1Q9BXG8 430 aa23.89■■□□□ 1.42
CLN3-245ENST00000636172 UBA5Q9GZZ9 404 aa23.89■■□□□ 1.42
CLN3-245ENST00000636172 MYH6P13533 1939 aa23.89■■□□□ 1.42
CLN3-245ENST00000636172 A0A0G2JLL6 359 aaPredicted RBP23.89■■□□□ 1.41
CLN3-245ENST00000636172 SMARCA1P28370 1054 aa23.89■■□□□ 1.41
CLN3-245ENST00000636172 SLC16A2P36021 539 aa23.89■■□□□ 1.41
CLN3-245ENST00000636172 HMGN5P82970 282 aaKnown RBP23.89■■□□□ 1.41
CLN3-245ENST00000636172 PRRT2Q7Z6L0 340 aaPredicted RBP23.89■■□□□ 1.41
CLN3-245ENST00000636172 SLC26A6Q9BXS9 759 aa23.89■■□□□ 1.41
CLN3-245ENST00000636172 TMOD4Q9NZQ9 345 aa23.89■■□□□ 1.41
CLN3-245ENST00000636172 TLL2Q9Y6L7 1015 aa23.89■■□□□ 1.41
CLN3-245ENST00000636172 STK36Q9NRP7 1315 aa23.89■■□□□ 1.41
CLN3-245ENST00000636172 TMEM232C9JQI7 657 aa23.88■■□□□ 1.41
CLN3-245ENST00000636172 SSRP1Q08945 709 aaKnown RBP23.88■■□□□ 1.41
CLN3-245ENST00000636172 RNF26Q9BY78 433 aaPredicted RBP23.88■■□□□ 1.41
CLN3-245ENST00000636172 ORC3Q9UBD5 711 aaPredicted RBP23.88■■□□□ 1.41
CLN3-245ENST00000636172 TMEM88BA6NKF7 163 aa23.87■■□□□ 1.41
CLN3-245ENST00000636172 BTNL9Q6UXG8 535 aa23.87■■□□□ 1.41
CLN3-245ENST00000636172 TRIM22Q8IYM9 498 aa23.87■■□□□ 1.41
CLN3-245ENST00000636172 RIOX1Q9H6W3 641 aa23.87■■□□□ 1.41
CLN3-245ENST00000636172 PRPF3O43395 683 aaKnown RBP23.86■■□□□ 1.41
CLN3-245ENST00000636172 ADGRF4Q8IZF3 695 aa23.86■■□□□ 1.41
CLN3-245ENST00000636172 RPAP3Q9H6T3 665 aaPredicted RBP23.86■■□□□ 1.41
CLN3-245ENST00000636172 CWC22Q9HCG8 908 aaKnown RBP23.86■■□□□ 1.41
CLN3-245ENST00000636172 V9GY48 417 aaPredicted RBP23.86■■□□□ 1.41
CLN3-245ENST00000636172 PARP14Q460N5 1801 aa23.86■■□□□ 1.41
CLN3-245ENST00000636172 hCG_1642624A0A1W2PR95 340 aa23.85■■□□□ 1.41
CLN3-245ENST00000636172 PLA2G6O60733 806 aa23.85■■□□□ 1.41
CLN3-245ENST00000636172 STAT2P52630 851 aa23.85■■□□□ 1.41
CLN3-245ENST00000636172 SNAPC2Q13487 334 aa23.85■■□□□ 1.41
CLN3-245ENST00000636172 MOGSQ13724 837 aa23.85■■□□□ 1.41
CLN3-245ENST00000636172 SPRYD7Q5W111 196 aa23.85■■□□□ 1.41
CLN3-245ENST00000636172 PIBF1Q8WXW3 757 aa23.85■■□□□ 1.41
CLN3-245ENST00000636172 FBXO28Q9NVF7 368 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms