RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 ZKSCAN4Q969J2 545 aaPredicted RBP16.39■□□□□ 0.21
CLN3-242ENST00000635958 KLRF2D3W0D1 207 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 KIF3CO14782 793 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 PTPRAP18433 802 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 ECE1P42892 770 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 GPATCH4Q5T3I0 446 aaKnown RBP16.38■□□□□ 0.21
CLN3-242ENST00000635958 SLFN13Q68D06 897 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.38■□□□□ 0.21
CLN3-242ENST00000635958 TRIM22Q8IYM9 498 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 FZD1Q9UP38 647 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 DOCK1Q14185 1865 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 BAG4O95429 457 aaKnown RBP16.38■□□□□ 0.21
CLN3-242ENST00000635958 BRD1O95696 1058 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 NDUFB10O96000 172 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 IREB2P48200 963 aaKnown RBP16.38■□□□□ 0.21
CLN3-242ENST00000635958 CMTR1Q8N1G2 835 aaKnown RBP16.38■□□□□ 0.21
CLN3-242ENST00000635958 SPZ1Q9BXG8 430 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 SLC26A6Q9BXS9 759 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 KIAA1683Q9H0B3 1180 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 PICK1Q9NRD5 415 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.38■□□□□ 0.21
CLN3-242ENST00000635958 ZDHHC9Q9Y397 364 aa16.38■□□□□ 0.21
CLN3-242ENST00000635958 CNTNAP5Q8WYK1 1306 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 ESPNB1AK53 854 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 STX6O43752 255 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 DEXIO95424 95 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 PKP1Q13835 747 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 SLC35G1Q2M3R5 365 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 RASGRP2Q7LDG7 609 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 PPP1R9BQ96SB3 815 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 VCPKMTQ9H867 229 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 GOPCQ9HD26 462 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 RBM27Q9P2N5 1060 aaKnown RBP16.37■□□□□ 0.21
CLN3-242ENST00000635958 MTMR7Q9Y216 660 aa16.37■□□□□ 0.21
CLN3-242ENST00000635958 PAPPA2Q9BXP8 1791 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 UNCXA6NJT0 531 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 CYTH3O43739 400 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 PPFIA3O75145 1194 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 GOLGA8HP0CJ92 632 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 ZNF445P59923 1031 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 PRKG1Q13976 671 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 CCDC82Q8N4S0 544 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 WASF1Q92558 559 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 RIOX1Q9H6W3 641 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 AS3MTQ9HBK9 375 aa16.36■□□□□ 0.21
CLN3-242ENST00000635958 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.36■□□□□ 0.21
CLN3-242ENST00000635958 V9GY48 417 aaPredicted RBP16.36■□□□□ 0.21
CLN3-242ENST00000635958 BAZ2BQ9UIF8 2168 aaKnown RBP16.36■□□□□ 0.21
CLN3-242ENST00000635958 WDR33Q9C0J8 1336 aaKnown RBP16.36■□□□□ 0.21
CLN3-242ENST00000635958 SLC1A4P43007 532 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 VGLL4Q14135 290 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 PKN1Q16512 942 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 HS1BP3Q53T59 392 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 CCDC84Q86UT8 332 aaPredicted RBP16.35■□□□□ 0.21
CLN3-242ENST00000635958 ANKRD13AQ8IZ07 590 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 PANK2Q9BZ23 570 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 MTMR6Q9Y217 621 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 SNCAIPQ9Y6H5 919 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 TRAF5O00463 557 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 AKAP17AQ02040 695 aaKnown RBP16.35■□□□□ 0.21
CLN3-242ENST00000635958 KIAA1755Q5JYT7 1200 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 LDLRAD1Q5T700 205 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 ARMC9Q7Z3E5 817 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 ZNF280CQ8ND82 737 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 CSADQ9Y600 493 aa16.35■□□□□ 0.21
CLN3-242ENST00000635958 USP17L10C9JJH3 530 aa16.34■□□□□ 0.21
CLN3-242ENST00000635958 BMP3P12645 472 aa16.34■□□□□ 0.21
CLN3-242ENST00000635958 FKBP1BP68106 108 aa16.34■□□□□ 0.21
CLN3-242ENST00000635958 CHADLQ6NUI6 762 aa16.34■□□□□ 0.21
CLN3-242ENST00000635958 BTNL9Q6UXG8 535 aa16.34■□□□□ 0.21
CLN3-242ENST00000635958 FBXO18Q8NFZ0 1043 aa16.34■□□□□ 0.21
CLN3-242ENST00000635958 LPAR1Q92633 364 aa16.34■□□□□ 0.21
CLN3-242ENST00000635958 ALG1Q9BT22 464 aa16.34■□□□□ 0.21
CLN3-242ENST00000635958 DDX49Q9Y6V7 483 aaKnown RBP16.34■□□□□ 0.21
CLN3-242ENST00000635958 ZHX2Q9Y6X8 837 aa16.34■□□□□ 0.21
CLN3-242ENST00000635958 FRMPD2Q68DX3 1309 aaPredicted RBP16.34■□□□□ 0.21
CLN3-242ENST00000635958 UBE2Q2LH0YL09 131 aa16.33■□□□□ 0.21
CLN3-242ENST00000635958 PLA2G6O60733 806 aa16.33■□□□□ 0.21
CLN3-242ENST00000635958 ITGBL1O95965 494 aaPredicted RBP16.33■□□□□ 0.21
CLN3-242ENST00000635958 ZSCAN22P10073 491 aaPredicted RBP16.33■□□□□ 0.21
CLN3-242ENST00000635958 USP14P54578 494 aa16.33■□□□□ 0.21
CLN3-242ENST00000635958 BACE1P56817 501 aa16.33■□□□□ 0.21
CLN3-242ENST00000635958 SPP2Q13103 211 aa16.33■□□□□ 0.21
CLN3-242ENST00000635958 PFKFB3Q16875 520 aaPredicted RBP16.33■□□□□ 0.21
CLN3-242ENST00000635958 TTBK2Q6IQ55 1244 aa16.33■□□□□ 0.21
CLN3-242ENST00000635958 KCTD1Q719H9 257 aa16.33■□□□□ 0.21
CLN3-242ENST00000635958 GPCPD1Q9NPB8 672 aa16.33■□□□□ 0.21
CLN3-242ENST00000635958 AFG3L2Q9Y4W6 797 aa16.33■□□□□ 0.21
CLN3-242ENST00000635958 PHIPQ8WWQ0 1821 aa16.33■□□□□ 0.2
CLN3-242ENST00000635958 C19orf81C9J6K1 198 aa16.33■□□□□ 0.2
CLN3-242ENST00000635958 CCDC96Q2M329 555 aa16.33■□□□□ 0.2
CLN3-242ENST00000635958 MTMR8Q96EF0 704 aa16.33■□□□□ 0.2
CLN3-242ENST00000635958 C8orf76Q96K31 380 aa16.33■□□□□ 0.2
CLN3-242ENST00000635958 AIFM3Q96NN9 605 aa16.33■□□□□ 0.2
CLN3-242ENST00000635958 UBA5Q9GZZ9 404 aa16.33■□□□□ 0.2
CLN3-242ENST00000635958 MYH6P13533 1939 aa16.32■□□□□ 0.2
CLN3-242ENST00000635958 FMR1Q06787 632 aaKnown RBP eCLIP16.32■□□□□ 0.2
CLN3-242ENST00000635958 MOB2Q70IA6 237 aa16.32■□□□□ 0.2
CLN3-242ENST00000635958 ERO1BQ86YB8 467 aa16.32■□□□□ 0.2
CLN3-242ENST00000635958 C12orf42Q96LP6 360 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms