RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 VPS53Q5VIR6 699 aa17.61■□□□□ 0.41
LINC00643-206ENST00000623985 SHCBP1Q8NEM2 672 aa17.61■□□□□ 0.41
LINC00643-206ENST00000623985 CEP95Q96GE4 821 aa17.61■□□□□ 0.41
LINC00643-206ENST00000623985 MOV10L1Q9BXT6 1211 aaKnown RBP17.61■□□□□ 0.41
LINC00643-206ENST00000623985 ANAPC4Q9UJX5 808 aa17.61■□□□□ 0.41
LINC00643-206ENST00000623985 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.61■□□□□ 0.41
LINC00643-206ENST00000623985 CCDC171Q6TFL3 1326 aa17.61■□□□□ 0.41
LINC00643-206ENST00000623985 RPTORQ8N122 1335 aa17.61■□□□□ 0.41
LINC00643-206ENST00000623985 RAD21O60216 631 aa17.6■□□□□ 0.41
LINC00643-206ENST00000623985 TTLL1O95922 423 aa17.6■□□□□ 0.41
LINC00643-206ENST00000623985 PTPREP23469 700 aa17.6■□□□□ 0.41
LINC00643-206ENST00000623985 IRX6P78412 446 aaPredicted RBP17.6■□□□□ 0.41
LINC00643-206ENST00000623985 FAM83BQ5T0W9 1011 aa17.6■□□□□ 0.41
LINC00643-206ENST00000623985 MAP3K21Q5TCX8 1036 aa17.6■□□□□ 0.41
LINC00643-206ENST00000623985 ZNF589Q86UQ0 364 aaPredicted RBP17.6■□□□□ 0.41
LINC00643-206ENST00000623985 NEDD1Q8NHV4 660 aa17.6■□□□□ 0.41
LINC00643-206ENST00000623985 HMX1Q9NP08 348 aaPredicted RBP17.6■□□□□ 0.41
LINC00643-206ENST00000623985 MTMR4Q9NYA4 1195 aa17.6■□□□□ 0.41
LINC00643-206ENST00000623985 PPP1R9AQ9ULJ8 1098 aa17.6■□□□□ 0.41
LINC00643-206ENST00000623985 ADAMTS5Q9UNA0 930 aa17.6■□□□□ 0.41
LINC00643-206ENST00000623985 DNAH12Q6ZR08 3092 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 CEP290O15078 2479 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 LCTP09848 1927 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 SDSP20132 328 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 MFAP1P55081 439 aaKnown RBP17.59■□□□□ 0.41
LINC00643-206ENST00000623985 TRIM32Q13049 653 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 PPP4R3BQ5MIZ7 849 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 UBE2Q1Q7Z7E8 422 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 GMCL1P1Q8NEA9 526 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 MKL1Q969V6 931 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 DEFB118Q96PH6 123 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 CLIP2Q9UDT6 1046 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 SMCHD1A6NHR9 2005 aa17.59■□□□□ 0.41
LINC00643-206ENST00000623985 TSPY2A6NKD2 308 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 F5H6K3 240 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 HIP1O00291 1037 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 NDUFB10O96000 172 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 HOXC6P09630 235 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 HSPD1P10809 573 aaKnown RBP17.58■□□□□ 0.4
LINC00643-206ENST00000623985 PRKAR2AP13861 404 aaKnown RBP17.58■□□□□ 0.4
LINC00643-206ENST00000623985 ERCC3P19447 782 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 TFAP4Q01664 338 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 CTDSPL2Q05D32 466 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 KLRC3Q07444 240 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 PLS1Q14651 629 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 CRISPLD2Q9H0B8 497 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 MROH8Q9H579 483 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 FBXO28Q9NVF7 368 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 LRRC37A2A6NM11 1700 aa17.58■□□□□ 0.4
LINC00643-206ENST00000623985 VWA5AO00534 786 aa17.57■□□□□ 0.4
LINC00643-206ENST00000623985 STRNO43815 780 aa17.57■□□□□ 0.4
LINC00643-206ENST00000623985 FARP2O94887 1054 aaPredicted RBP17.57■□□□□ 0.4
LINC00643-206ENST00000623985 SLC25A27O95847 323 aa17.57■□□□□ 0.4
LINC00643-206ENST00000623985 TMEM132BQ14DG7 1078 aa17.57■□□□□ 0.4
LINC00643-206ENST00000623985 CCL14Q16627 93 aa17.57■□□□□ 0.4
LINC00643-206ENST00000623985 FAM47AQ5JRC9 791 aa17.57■□□□□ 0.4
LINC00643-206ENST00000623985 SAMD1Q6SPF0 538 aaPredicted RBP17.57■□□□□ 0.4
LINC00643-206ENST00000623985 LRRC47Q8N1G4 583 aaKnown RBP17.57■□□□□ 0.4
LINC00643-206ENST00000623985 SLF1Q9BQI6 1058 aa17.57■□□□□ 0.4
LINC00643-206ENST00000623985 DIAPH3Q9NSV4 1193 aa17.57■□□□□ 0.4
LINC00643-206ENST00000623985 ORC4O43929 436 aa17.56■□□□□ 0.4
LINC00643-206ENST00000623985 FGAP02671 866 aa17.56■□□□□ 0.4
LINC00643-206ENST00000623985 ADORA2AP29274 412 aa17.56■□□□□ 0.4
LINC00643-206ENST00000623985 COPB2P35606 906 aa17.56■□□□□ 0.4
LINC00643-206ENST00000623985 NCAPG2Q86XI2 1143 aa17.56■□□□□ 0.4
LINC00643-206ENST00000623985 ABRAQ8N0Z2 381 aa17.56■□□□□ 0.4
LINC00643-206ENST00000623985 NUP88Q99567 741 aaPredicted RBP17.56■□□□□ 0.4
LINC00643-206ENST00000623985 ZNF214Q9UL59 606 aaPredicted RBP17.56■□□□□ 0.4
LINC00643-206ENST00000623985 TFRCP02786 760 aaKnown RBP17.55■□□□□ 0.4
LINC00643-206ENST00000623985 FGRP09769 529 aa17.55■□□□□ 0.4
LINC00643-206ENST00000623985 PDE4AP27815 886 aa17.55■□□□□ 0.4
LINC00643-206ENST00000623985 CACNB2Q08289 660 aaPredicted RBP17.55■□□□□ 0.4
LINC00643-206ENST00000623985 RIOX2Q8IUF8 465 aa17.55■□□□□ 0.4
LINC00643-206ENST00000623985 ANKLE1Q8NAG6 615 aa17.55■□□□□ 0.4
LINC00643-206ENST00000623985 REPS2Q8NFH8 660 aa17.55■□□□□ 0.4
LINC00643-206ENST00000623985 NPLOC4Q8TAT6 608 aa17.55■□□□□ 0.4
LINC00643-206ENST00000623985 HTATIP2Q9BUP3 242 aa17.55■□□□□ 0.4
LINC00643-206ENST00000623985 PCP11498 1178 aaKnown RBP17.54■□□□□ 0.4
LINC00643-206ENST00000623985 TTC22Q5TAA0 569 aa17.54■□□□□ 0.4
LINC00643-206ENST00000623985 MFSD14CQ5VZR4 134 aa17.54■□□□□ 0.4
LINC00643-206ENST00000623985 CWC27Q6UX04 472 aaKnown RBP17.54■□□□□ 0.4
LINC00643-206ENST00000623985 DPP9Q86TI2 863 aa17.54■□□□□ 0.4
LINC00643-206ENST00000623985 PRPF38AQ8NAV1 312 aaKnown RBP17.54■□□□□ 0.4
LINC00643-206ENST00000623985 SLC5A4Q9NY91 659 aa17.54■□□□□ 0.4
LINC00643-206ENST00000623985 FLRT1Q9NZU1 646 aa17.54■□□□□ 0.4
LINC00643-206ENST00000623985 FEM1BQ9UK73 627 aa17.54■□□□□ 0.4
LINC00643-206ENST00000623985 STX8Q9UNK0 236 aa17.54■□□□□ 0.4
LINC00643-206ENST00000623985 TACC3Q9Y6A5 838 aa17.54■□□□□ 0.4
LINC00643-206ENST00000623985 RANBP6O60518 1105 aaKnown RBP17.53■□□□□ 0.4
LINC00643-206ENST00000623985 FCER1AP12319 257 aa17.53■□□□□ 0.4
LINC00643-206ENST00000623985 OLFML2BQ68BL8 750 aa17.53■□□□□ 0.4
LINC00643-206ENST00000623985 SLFN13Q68D06 897 aa17.53■□□□□ 0.4
LINC00643-206ENST00000623985 GMCL1Q96IK5 515 aa17.53■□□□□ 0.4
LINC00643-206ENST00000623985 TEX13BQ9BXU2 312 aa17.53■□□□□ 0.4
LINC00643-206ENST00000623985 INCENPQ9NQS7 918 aa17.53■□□□□ 0.4
LINC00643-206ENST00000623985 IL17RBQ9NRM6 502 aa17.53■□□□□ 0.4
LINC00643-206ENST00000623985 ATP2A1O14983 1001 aa17.52■□□□□ 0.4
LINC00643-206ENST00000623985 IGHA2P01877 340 aa17.52■□□□□ 0.4
LINC00643-206ENST00000623985 BMP3P12645 472 aa17.52■□□□□ 0.4
LINC00643-206ENST00000623985 GSPT1P15170 499 aaKnown RBP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms