RNA–Protein interactions for RNA: ENST00000622702.1

PDLIM2-221, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5 BASIC

Gene PDLIM2, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-221ENST00000622702 ZNF654Q8IZM8 581 aa23.19■■□□□ 1.3
PDLIM2-221ENST00000622702 VCPKMTQ9H867 229 aa23.19■■□□□ 1.3
PDLIM2-221ENST00000622702 KLF18A0A0U1RQI7 1052 aa23.18■■□□□ 1.3
PDLIM2-221ENST00000622702 F5H6K3 240 aa23.18■■□□□ 1.3
PDLIM2-221ENST00000622702 KLRC3Q07444 240 aa23.18■■□□□ 1.3
PDLIM2-221ENST00000622702 SH3D19Q5HYK7 790 aa23.18■■□□□ 1.3
PDLIM2-221ENST00000622702 PROCA1Q8NCQ7 364 aaPredicted RBP23.18■■□□□ 1.3
PDLIM2-221ENST00000622702 ZNF274Q96GC6 653 aaPredicted RBP23.18■■□□□ 1.3
PDLIM2-221ENST00000622702 GOPCQ9HD26 462 aa23.18■■□□□ 1.3
PDLIM2-221ENST00000622702 PRDM10Q9NQV6 1147 aa23.18■■□□□ 1.3
PDLIM2-221ENST00000622702 LOC285556D6RIA3 1793 aa23.18■■□□□ 1.3
PDLIM2-221ENST00000622702 CD2BP2O95400 341 aaKnown RBP23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 SYNE3Q6ZMZ3 975 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 SNX21Q969T3 373 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 MAP3K14Q99558 947 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 ZFYVE28Q9HCC9 887 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 TSHZ2Q9NRE2 1034 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 TMOD4Q9NZQ9 345 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 TPCN1Q9ULQ1 816 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 LIMCH1Q9UPQ0 1083 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 NDUFB10O96000 172 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 CALM1P0DP23 149 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 CALM2P0DP24 149 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 CALM3P0DP25 149 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 SNHG28P0DPA3 235 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 TREML2Q5T2D2 321 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 USP17L2Q6R6M4 530 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 LPAR1Q92633 364 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 GMCL1Q96IK5 515 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 C12orf42Q96LP6 360 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 LARP6Q9BRS8 491 aaKnown RBP23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 AGTPBP1Q9UPW5 1226 aa23.17■■□□□ 1.3
PDLIM2-221ENST00000622702 CASP8AP2Q9UKL3 1982 aa23.16■■□□□ 1.3
PDLIM2-221ENST00000622702 GPR25O00155 361 aa23.16■■□□□ 1.3
PDLIM2-221ENST00000622702 ZBTB43O43298 467 aa23.16■■□□□ 1.3
PDLIM2-221ENST00000622702 PDHBP11177 359 aa23.16■■□□□ 1.3
PDLIM2-221ENST00000622702 PDIA3P30101 505 aaKnown RBP23.16■■□□□ 1.3
PDLIM2-221ENST00000622702 ZYXQ15942 572 aaKnown RBP23.16■■□□□ 1.3
PDLIM2-221ENST00000622702 SLFN13Q68D06 897 aa23.16■■□□□ 1.3
PDLIM2-221ENST00000622702 EMILIN3Q9NT22 766 aa23.16■■□□□ 1.3
PDLIM2-221ENST00000622702 GOLGA8BA8MQT2 603 aa23.15■■□□□ 1.3
PDLIM2-221ENST00000622702 KIAA1755Q5JYT7 1200 aa23.15■■□□□ 1.3
PDLIM2-221ENST00000622702 MICU3Q86XE3 530 aa23.15■■□□□ 1.3
PDLIM2-221ENST00000622702 DCAF4Q8WV16 495 aa23.15■■□□□ 1.3
PDLIM2-221ENST00000622702 MYL10Q9BUA6 226 aa23.15■■□□□ 1.3
PDLIM2-221ENST00000622702 HPS5Q9UPZ3 1129 aa23.15■■□□□ 1.3
PDLIM2-221ENST00000622702 SLC45A1Q9Y2W3 748 aa23.15■■□□□ 1.3
PDLIM2-221ENST00000622702 NID2Q14112 1375 aa23.15■■□□□ 1.3
PDLIM2-221ENST00000622702 NOL8Q76FK4 1167 aaKnown RBP23.14■■□□□ 1.29
PDLIM2-221ENST00000622702 NUP133Q8WUM0 1156 aa23.14■■□□□ 1.29
PDLIM2-221ENST00000622702 ZSCAN31Q96LW9 406 aaPredicted RBP23.14■■□□□ 1.29
PDLIM2-221ENST00000622702 CYP2C8P10632 490 aa23.13■■□□□ 1.29
PDLIM2-221ENST00000622702 GRM4Q14833 912 aa23.13■■□□□ 1.29
PDLIM2-221ENST00000622702 PPP2R5BQ15173 497 aa23.13■■□□□ 1.29
PDLIM2-221ENST00000622702 ME3Q16798 604 aa23.13■■□□□ 1.29
PDLIM2-221ENST00000622702 NOM1Q5C9Z4 860 aaKnown RBP23.13■■□□□ 1.29
PDLIM2-221ENST00000622702 ZNF296Q8WUU4 475 aaPredicted RBP23.13■■□□□ 1.29
PDLIM2-221ENST00000622702 PARK7Q99497 189 aaKnown RBP23.13■■□□□ 1.29
PDLIM2-221ENST00000622702 NAP1L2Q9ULW6 460 aaPredicted RBP23.13■■□□□ 1.29
PDLIM2-221ENST00000622702 WDR46O15213 610 aaKnown RBP23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 TLR2O60603 784 aa23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 PFKFB2O60825 505 aa23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 SLC1A4P43007 532 aa23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 PABPC4Q13310 644 aaKnown RBP eCLIP23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 RASGRP2Q7LDG7 609 aa23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 SPICE1Q8N0Z3 855 aa23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 FANCBQ8NB91 859 aa23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 SH2B1Q9NRF2 756 aaPredicted RBP23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 MTMR7Q9Y216 660 aa23.12■■□□□ 1.29
PDLIM2-221ENST00000622702 GOLGA8AA7E2F4 631 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 RAD21O60216 631 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 LARGE1O95461 756 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 PARP1P09874 1014 aaKnown RBP23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 VCAM1P19320 739 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 RXRAP19793 462 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 METAP2P50579 478 aaKnown RBP eCLIP23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 ZNF543Q08ER8 600 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 ASPRV1Q53RT3 343 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 GPATCH4Q5T3I0 446 aaKnown RBP23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 COL13A1Q5TAT6 717 aaPredicted RBP23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 RAB11FIP4Q86YS3 637 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 CTCFLQ8NI51 663 aaPredicted RBP23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 SLKQ9H2G2 1235 aaPredicted RBP23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 PALM3A6NDB9 673 aaPredicted RBP23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 FKTNO75072 461 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 BMP3P12645 472 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 KIF5BP33176 963 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 RTN1Q16799 776 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 TMX3Q96JJ7 454 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 MAD2L2Q9UI95 211 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 PNMA3Q9UL41 463 aa23.11■■□□□ 1.29
PDLIM2-221ENST00000622702 OSBPP22059 807 aa23.1■■□□□ 1.29
PDLIM2-221ENST00000622702 NUP88Q99567 741 aaPredicted RBP23.1■■□□□ 1.29
PDLIM2-221ENST00000622702 FAM217BQ9NTX9 383 aaPredicted RBP23.1■■□□□ 1.29
PDLIM2-221ENST00000622702 RBM28Q9NW13 759 aaKnown RBP23.1■■□□□ 1.29
PDLIM2-221ENST00000622702 CPA4Q9UI42 421 aa23.1■■□□□ 1.29
PDLIM2-221ENST00000622702 CCDC196A0A1B0GTZ2 297 aa23.09■■□□□ 1.29
PDLIM2-221ENST00000622702 HOXA7P31268 230 aaPredicted RBP23.09■■□□□ 1.29
PDLIM2-221ENST00000622702 GNAQP50148 359 aa23.09■■□□□ 1.29
PDLIM2-221ENST00000622702 STK3Q13188 491 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms