RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 DDIT3P35638 169 aa20.69■□□□□ 0.9
PTCHD3-202ENST00000622555 TRIM22Q8IYM9 498 aa20.69■□□□□ 0.9
PTCHD3-202ENST00000622555 SPICE1Q8N0Z3 855 aa20.69■□□□□ 0.9
PTCHD3-202ENST00000622555 LZTS2Q9BRK4 669 aa20.69■□□□□ 0.9
PTCHD3-202ENST00000622555 VCPKMTQ9H867 229 aa20.69■□□□□ 0.9
PTCHD3-202ENST00000622555 FMNL1O95466 1100 aaPredicted RBP20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 ITGBL1O95965 494 aaPredicted RBP20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 FDPSP14324 419 aaKnown RBP20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 FUT2Q10981 343 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 SPP2Q13103 211 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 GPATCH4Q5T3I0 446 aaKnown RBP20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 KCTD1Q719H9 257 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 NBPF11Q86T75 865 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 ZNF280CQ8ND82 737 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 GMCL1Q96IK5 515 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 CLMNQ96JQ2 1002 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 KIAA1683Q9H0B3 1180 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 ELP3Q9H9T3 547 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 GBA2Q9HCG7 927 aaPredicted RBP20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 KIF3AQ9Y496 699 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 CNTNAP5Q8WYK1 1306 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 STK36Q9NRP7 1315 aa20.68■□□□□ 0.9
PTCHD3-202ENST00000622555 TRIM75PA6NK02 468 aa20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 USP17L10C9JJH3 530 aa20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 KIF3CO14782 793 aa20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 AKAP17AQ02040 695 aaKnown RBP20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 MTMR2Q13614 643 aa20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 KIAA1755Q5JYT7 1200 aa20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 NUP88Q99567 741 aaPredicted RBP20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 FKBP1BP68106 108 aa20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 RNF26Q9BY78 433 aaPredicted RBP20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 CPVLQ9H3G5 476 aa20.67■□□□□ 0.9
PTCHD3-202ENST00000622555 BMP3P12645 472 aa20.66■□□□□ 0.9
PTCHD3-202ENST00000622555 LDLRAD1Q5T700 205 aa20.66■□□□□ 0.9
PTCHD3-202ENST00000622555 TTBK2Q6IQ55 1244 aa20.66■□□□□ 0.9
PTCHD3-202ENST00000622555 C2orf69Q8N8R5 385 aa20.66■□□□□ 0.9
PTCHD3-202ENST00000622555 UBA5Q9GZZ9 404 aa20.66■□□□□ 0.9
PTCHD3-202ENST00000622555 CIZ1Q9ULV3 898 aaPredicted RBP20.66■□□□□ 0.9
PTCHD3-202ENST00000622555 V9GY48 417 aaPredicted RBP20.66■□□□□ 0.9
PTCHD3-202ENST00000622555 PTPRFP10586 1907 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 PRPF3O43395 683 aaKnown RBP20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 PDCP20941 246 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 USP14P54578 494 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 BACE1P56817 501 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 LARP1BQ659C4 914 aaKnown RBP20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 ERO1BQ86YB8 467 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 CNKSR2Q8WXI2 1034 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 PIBF1Q8WXW3 757 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 SPZ1Q9BXG8 430 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 CHMP5Q9NZZ3 219 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 AFG3L2Q9Y4W6 797 aa20.65■□□□□ 0.9
PTCHD3-202ENST00000622555 hCG_1642624A0A1W2PR95 340 aa20.64■□□□□ 0.9
PTCHD3-202ENST00000622555 DEXIO95424 95 aa20.64■□□□□ 0.9
PTCHD3-202ENST00000622555 FOSBP53539 338 aa20.64■□□□□ 0.9
PTCHD3-202ENST00000622555 SLC35G1Q2M3R5 365 aa20.64■□□□□ 0.9
PTCHD3-202ENST00000622555 FAM83BQ5T0W9 1011 aa20.64■□□□□ 0.9
PTCHD3-202ENST00000622555 LPAR1Q92633 364 aa20.64■□□□□ 0.9
PTCHD3-202ENST00000622555 OTUD5Q96G74 571 aa20.64■□□□□ 0.9
PTCHD3-202ENST00000622555 CYTH3O43739 400 aa20.64■□□□□ 0.89
PTCHD3-202ENST00000622555 SYT1P21579 422 aa20.64■□□□□ 0.89
PTCHD3-202ENST00000622555 YY1P25490 414 aa20.64■□□□□ 0.89
PTCHD3-202ENST00000622555 SMARCA1P28370 1054 aa20.64■□□□□ 0.89
PTCHD3-202ENST00000622555 SLC16A2P36021 539 aa20.64■□□□□ 0.89
PTCHD3-202ENST00000622555 IKQ13123 557 aaPredicted RBP20.64■□□□□ 0.89
PTCHD3-202ENST00000622555 WASF1Q92558 559 aa20.64■□□□□ 0.89
PTCHD3-202ENST00000622555 ALG1Q9BT22 464 aa20.64■□□□□ 0.89
PTCHD3-202ENST00000622555 VAT1LQ9HCJ6 419 aa20.64■□□□□ 0.89
PTCHD3-202ENST00000622555 SPDYE5A6NIY4 337 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 UNCXA6NJT0 531 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 C19orf81C9J6K1 198 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 TMEM232C9JQI7 657 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 HMGCS2P54868 508 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 PPATQ06203 517 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 DGKZQ13574 1117 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 NBR1Q14596 966 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 CST9Q5W186 159 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 SMC1BQ8NDV3 1235 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 SLC10A4Q96EP9 437 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 AIFM3Q96NN9 605 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 EMILIN3Q9NT22 766 aa20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 RBM27Q9P2N5 1060 aaKnown RBP20.63■□□□□ 0.89
PTCHD3-202ENST00000622555 STX6O43752 255 aa20.62■□□□□ 0.89
PTCHD3-202ENST00000622555 PKP1Q13835 747 aa20.62■□□□□ 0.89
PTCHD3-202ENST00000622555 RBM46Q8TBY0 533 aaKnown RBP20.62■□□□□ 0.89
PTCHD3-202ENST00000622555 RIOX1Q9H6W3 641 aa20.62■□□□□ 0.89
PTCHD3-202ENST00000622555 WDR46O15213 610 aaKnown RBP20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 NUCB2P80303 420 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 ADGRF4Q8IZF3 695 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 OPTNQ96CV9 577 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 RRP36Q96EU6 259 aaKnown RBP20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 C8orf76Q96K31 380 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 TMOD4Q9NZQ9 345 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 VPS37CA5D8V6 355 aaPredicted RBP20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 H3BQV1 296 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 VCAM1P19320 739 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 STAT2P52630 851 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 PPIL2Q13356 520 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 PKN1Q16512 942 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 IFFO2Q5TF58 517 aa20.61■□□□□ 0.89
PTCHD3-202ENST00000622555 HOMER1Q86YM7 354 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms