RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 TMTC1Q8IUR5 882 aa17.79■□□□□ 0.44
NPHP4-211ENST00000622020 EXOC4Q96A65 974 aa17.79■□□□□ 0.44
NPHP4-211ENST00000622020 RABEP2Q9H5N1 569 aa17.79■□□□□ 0.44
NPHP4-211ENST00000622020 PMS1P54277 932 aaKnown RBP17.78■□□□□ 0.44
NPHP4-211ENST00000622020 TCP11X2Q5H9J9 407 aa17.78■□□□□ 0.44
NPHP4-211ENST00000622020 FKBP15Q5T1M5 1219 aa17.78■□□□□ 0.44
NPHP4-211ENST00000622020 CYP26C1Q6V0L0 522 aa17.78■□□□□ 0.44
NPHP4-211ENST00000622020 IQUBQ8NA54 791 aa17.78■□□□□ 0.44
NPHP4-211ENST00000622020 ACTN2P35609 894 aa17.78■□□□□ 0.44
NPHP4-211ENST00000622020 GPKOWQ92917 476 aaPredicted RBP eCLIP17.78■□□□□ 0.44
NPHP4-211ENST00000622020 CARD10Q9BWT7 1032 aa17.78■□□□□ 0.44
NPHP4-211ENST00000622020 BRMS1Q9HCU9 246 aa17.78■□□□□ 0.44
NPHP4-211ENST00000622020 EPN1Q9Y6I3 576 aaPredicted RBP17.78■□□□□ 0.44
NPHP4-211ENST00000622020 PKD1L3Q7Z443 1732 aa17.78■□□□□ 0.44
NPHP4-211ENST00000622020 SRBD1Q8N5C6 995 aaKnown RBP17.77■□□□□ 0.44
NPHP4-211ENST00000622020 RSPH14Q9UHP6 348 aa17.77■□□□□ 0.44
NPHP4-211ENST00000622020 REXO2Q9Y3B8 237 aaKnown RBP17.77■□□□□ 0.44
NPHP4-211ENST00000622020 USP17L12C9JPN9 530 aa17.77■□□□□ 0.44
NPHP4-211ENST00000622020 USP17L21D6R901 530 aa17.77■□□□□ 0.44
NPHP4-211ENST00000622020 ZNF185O15231 689 aa17.77■□□□□ 0.44
NPHP4-211ENST00000622020 ATP1A1P05023 1023 aaKnown RBP17.77■□□□□ 0.44
NPHP4-211ENST00000622020 KLK7P49862 253 aa17.77■□□□□ 0.44
NPHP4-211ENST00000622020 BRINP3Q76B58 766 aa17.77■□□□□ 0.44
NPHP4-211ENST00000622020 MMS19Q96T76 1030 aa17.77■□□□□ 0.44
NPHP4-211ENST00000622020 DUSP10Q9Y6W6 482 aa17.77■□□□□ 0.44
NPHP4-211ENST00000622020 EIF3JO75822 258 aaKnown RBP17.77■□□□□ 0.43
NPHP4-211ENST00000622020 GNAT2P19087 354 aa17.77■□□□□ 0.43
NPHP4-211ENST00000622020 CHRNDQ07001 517 aa17.77■□□□□ 0.43
NPHP4-211ENST00000622020 CCDC122Q5T0U0 273 aa17.77■□□□□ 0.43
NPHP4-211ENST00000622020 PCMTD1Q96MG8 357 aaPredicted RBP17.77■□□□□ 0.43
NPHP4-211ENST00000622020 NDUFA10O95299 355 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 CYP27A1Q02318 531 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 FUT2Q10981 343 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 NPY5RQ15761 445 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.76■□□□□ 0.43
NPHP4-211ENST00000622020 IQCA1Q86XH1 822 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 MSANTD4Q8NCY6 345 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 ANKRD20A12PQ8NF67 263 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 GOLGA5Q8TBA6 731 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 FERMT2Q96AC1 680 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 DRC1Q96MC2 740 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 FAM204AQ9H8W3 233 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 RAB21Q9UL25 225 aa17.76■□□□□ 0.43
NPHP4-211ENST00000622020 IGHMBP2P38935 993 aaKnown RBP17.76■□□□□ 0.43
NPHP4-211ENST00000622020 MACROD2A1Z1Q3 448 aa17.75■□□□□ 0.43
NPHP4-211ENST00000622020 RPN1P04843 607 aaKnown RBP17.75■□□□□ 0.43
NPHP4-211ENST00000622020 HSPA2P54652 639 aa17.75■□□□□ 0.43
NPHP4-211ENST00000622020 TROAPQ12815 778 aa17.75■□□□□ 0.43
NPHP4-211ENST00000622020 PSMB7Q99436 277 aa17.75■□□□□ 0.43
NPHP4-211ENST00000622020 RRP15Q9Y3B9 282 aaKnown RBP17.75■□□□□ 0.43
NPHP4-211ENST00000622020 PRPF3O43395 683 aaKnown RBP17.75■□□□□ 0.43
NPHP4-211ENST00000622020 PARP1P09874 1014 aaKnown RBP17.75■□□□□ 0.43
NPHP4-211ENST00000622020 STAT6P42226 847 aa17.75■□□□□ 0.43
NPHP4-211ENST00000622020 PIP4K2BP78356 416 aa17.75■□□□□ 0.43
NPHP4-211ENST00000622020 AGPAT5Q9NUQ2 364 aa17.75■□□□□ 0.43
NPHP4-211ENST00000622020 GNL3LQ9NVN8 582 aaKnown RBP17.75■□□□□ 0.43
NPHP4-211ENST00000622020 DDX60Q8IY21 1712 aaKnown RBP17.75■□□□□ 0.43
NPHP4-211ENST00000622020 CYP2D6P10635 497 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 E2F4Q16254 413 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 HNRNPLLQ8WVV9 542 aaKnown RBP17.74■□□□□ 0.43
NPHP4-211ENST00000622020 CWC15Q9P013 229 aaKnown RBP17.74■□□□□ 0.43
NPHP4-211ENST00000622020 B4DLN1 442 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 ATP2C1P98194 919 aaPredicted RBP17.74■□□□□ 0.43
NPHP4-211ENST00000622020 MUM1L1Q5H9M0 696 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 PDXDC2PQ6P474 469 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 KIAA1328Q86T90 577 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 CCDC148Q8NFR7 591 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 CTCFLQ8NI51 663 aaPredicted RBP17.74■□□□□ 0.43
NPHP4-211ENST00000622020 CAGE1Q8TC20 777 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 LUC7L2Q9Y383 392 aaKnown RBP17.74■□□□□ 0.43
NPHP4-211ENST00000622020 MATR3P43243 847 aaKnown RBP eCLIP17.74■□□□□ 0.432e-6■■■■□ 26.1
NPHP4-211ENST00000622020 USP5P45974 858 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 TRIM47Q96LD4 638 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 RASSF4Q9H2L5 321 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 LIMA1Q9UHB6 759 aaKnown RBP17.74■□□□□ 0.43
NPHP4-211ENST00000622020 RWDD2AQ9UIY3 292 aa17.74■□□□□ 0.43
NPHP4-211ENST00000622020 RTL9Q8NET4 1388 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 PNPLA7Q6ZV29 1317 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 NKRFO15226 690 aaKnown RBP eCLIP17.73■□□□□ 0.43
NPHP4-211ENST00000622020 EIF5P55010 431 aaKnown RBP17.73■□□□□ 0.43
NPHP4-211ENST00000622020 IRF2BP1Q8IU81 584 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 SMCR8Q8TEV9 937 aaPredicted RBP17.73■□□□□ 0.43
NPHP4-211ENST00000622020 LACRTQ9GZZ8 138 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 TNS2Q63HR2 1409 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 POTEB2H3BUK9 544 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 WHAMMP3Q1A5X7 153 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 TSR1Q2NL82 804 aaKnown RBP17.73■□□□□ 0.43
NPHP4-211ENST00000622020 SMIM5Q71RC9 77 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 JADE2Q9NQC1 790 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 BTG4Q9NY30 223 aa17.73■□□□□ 0.43
NPHP4-211ENST00000622020 RCCD1A6NED2 376 aa17.72■□□□□ 0.43
NPHP4-211ENST00000622020 SRLQ86TD4 932 aa17.72■□□□□ 0.43
NPHP4-211ENST00000622020 NIP7Q9Y221 180 aaKnown RBP eCLIP17.72■□□□□ 0.43
NPHP4-211ENST00000622020 COL5A2P05997 1499 aaPredicted RBP17.72■□□□□ 0.43
NPHP4-211ENST00000622020 RNF40O75150 1001 aa17.72■□□□□ 0.43
NPHP4-211ENST00000622020 TRIM21P19474 475 aaKnown RBP17.72■□□□□ 0.43
NPHP4-211ENST00000622020 AMPD2Q01433 879 aa17.72■□□□□ 0.43
NPHP4-211ENST00000622020 ZNF658Q5TYW1 1059 aaPredicted RBP17.72■□□□□ 0.43
NPHP4-211ENST00000622020 TMTC3Q6ZXV5 915 aa17.72■□□□□ 0.43
NPHP4-211ENST00000622020 OR8K1Q8NGG5 319 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms