RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 OXR1Q8N573 874 aa8.6□□□□□ -1.03
VPS29-212ENST00000621131 LINC01599Q8WXQ3 324 aa8.6□□□□□ -1.03
VPS29-212ENST00000621131 RNF34Q969K3 372 aa8.6□□□□□ -1.03
VPS29-212ENST00000621131 SLC9A7Q96T83 725 aa8.6□□□□□ -1.03
VPS29-212ENST00000621131 CLEC3AO75596 197 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 VAMP1P23763 118 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 PKN1Q16512 942 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 TIGD5Q53EQ6 642 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 INTS3Q68E01 1043 aaKnown RBP8.59□□□□□ -1.03
VPS29-212ENST00000621131 LILRA2Q8N149 483 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 ZNF655Q8N720 491 aaPredicted RBP8.59□□□□□ -1.03
VPS29-212ENST00000621131 TCTN2Q96GX1 697 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 ZNF512BQ96KM6 892 aaPredicted RBP8.59□□□□□ -1.03
VPS29-212ENST00000621131 DIRC2Q96SL1 478 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 G6PC3Q9BUM1 346 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 PRDM14Q9GZV8 571 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 RNF32Q9H0A6 362 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 KCNK12Q9HB15 430 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 DDX41Q9UJV9 622 aaKnown RBP8.59□□□□□ -1.03
VPS29-212ENST00000621131 PCDHGB7Q9Y5F8 929 aa8.59□□□□□ -1.03
VPS29-212ENST00000621131 FITM1A5D6W6 292 aa8.58□□□□□ -1.04
VPS29-212ENST00000621131 RNF111Q6ZNA4 994 aa8.58□□□□□ -1.04
VPS29-212ENST00000621131 SYDE1Q6ZW31 735 aaPredicted RBP8.58□□□□□ -1.04
VPS29-212ENST00000621131 SPPL2CQ8IUH8 684 aa8.58□□□□□ -1.04
VPS29-212ENST00000621131 CILP2Q8IUL8 1156 aa8.58□□□□□ -1.04
VPS29-212ENST00000621131 SYTL4Q96C24 671 aaPredicted RBP8.58□□□□□ -1.04
VPS29-212ENST00000621131 NSUN3Q9H649 340 aaKnown RBP8.58□□□□□ -1.04
VPS29-212ENST00000621131 ZNRF3Q9ULT6 936 aa8.58□□□□□ -1.04
VPS29-212ENST00000621131 RECKO95980 971 aa8.57□□□□□ -1.04
VPS29-212ENST00000621131 KRT1P04264 644 aa8.57□□□□□ -1.04
VPS29-212ENST00000621131 ACRP10323 421 aa8.57□□□□□ -1.04
VPS29-212ENST00000621131 FBXO15Q8NCQ5 510 aaPredicted RBP8.57□□□□□ -1.04
VPS29-212ENST00000621131 LINC00116Q8NCU8 138 aa8.57□□□□□ -1.04
VPS29-212ENST00000621131 SLC6A18Q96N87 628 aa8.57□□□□□ -1.04
VPS29-212ENST00000621131 SIGLEC6O43699 453 aa8.56□□□□□ -1.04
VPS29-212ENST00000621131 PRAMEF1O95521 474 aa8.56□□□□□ -1.04
VPS29-212ENST00000621131 DUSP4Q13115 394 aa8.56□□□□□ -1.04
VPS29-212ENST00000621131 ANKS4BQ8N8V4 417 aa8.56□□□□□ -1.04
VPS29-212ENST00000621131 FOXP3Q9BZS1 431 aa8.56□□□□□ -1.04
VPS29-212ENST00000621131 MINPP1Q9UNW1 487 aa8.56□□□□□ -1.04
VPS29-212ENST00000621131 TMEM82A0PJX8 343 aa8.55□□□□□ -1.04
VPS29-212ENST00000621131 NOTOA8MTQ0 251 aa8.55□□□□□ -1.04
VPS29-212ENST00000621131 CHRNEQ04844 493 aa8.55□□□□□ -1.04
VPS29-212ENST00000621131 SHISA4Q96DD7 197 aa8.55□□□□□ -1.04
VPS29-212ENST00000621131 PPP1R16BQ96T49 567 aa8.55□□□□□ -1.04
VPS29-212ENST00000621131 DCP1AQ9NPI6 582 aaPredicted RBP8.55□□□□□ -1.04
VPS29-212ENST00000621131 TCFL5Q9UL49 500 aa8.55□□□□□ -1.04
VPS29-212ENST00000621131 SCAMP3O14828 347 aaKnown RBP8.54□□□□□ -1.04
VPS29-212ENST00000621131 PSPNO60542 156 aa8.54□□□□□ -1.04
VPS29-212ENST00000621131 TSPAN15O95858 294 aa8.54□□□□□ -1.04
VPS29-212ENST00000621131 IMPDH2P12268 514 aa8.54□□□□□ -1.04
VPS29-212ENST00000621131 RPL10P27635 214 aaKnown RBP8.54□□□□□ -1.04
VPS29-212ENST00000621131 RAP1GAPP47736 663 aa8.54□□□□□ -1.04
VPS29-212ENST00000621131 PCBP3P57721 371 aaKnown RBP8.54□□□□□ -1.04
VPS29-212ENST00000621131 SNX17Q15036 470 aa8.54□□□□□ -1.04
VPS29-212ENST00000621131 METTL16Q86W50 562 aaKnown RBP8.54□□□□□ -1.04
VPS29-212ENST00000621131 RBBP8NLQ8NC74 664 aaPredicted RBP8.54□□□□□ -1.04
VPS29-212ENST00000621131 EPB41L4BQ9H329 900 aa8.54□□□□□ -1.04
VPS29-212ENST00000621131 CWC22Q9HCG8 908 aaKnown RBP8.54□□□□□ -1.04
VPS29-212ENST00000621131 AUHQ13825 339 aaKnown RBP8.53□□□□□ -1.04
VPS29-212ENST00000621131 BBS9Q3SYG4 887 aa8.53□□□□□ -1.04
VPS29-212ENST00000621131 WAPLQ7Z5K2 1190 aa8.53□□□□□ -1.04
VPS29-212ENST00000621131 TAB3Q8N5C8 712 aaPredicted RBP8.53□□□□□ -1.04
VPS29-212ENST00000621131 MKRN2Q9H000 416 aaKnown RBP8.53□□□□□ -1.04
VPS29-212ENST00000621131 CHST7Q9NS84 486 aa8.53□□□□□ -1.04
VPS29-212ENST00000621131 SUCOQ9UBS9 1254 aaKnown RBP8.53□□□□□ -1.04
VPS29-212ENST00000621131 YBX2Q9Y2T7 364 aaKnown RBP8.53□□□□□ -1.04
VPS29-212ENST00000621131 C9IYK1 514 aa8.52□□□□□ -1.05
VPS29-212ENST00000621131 SYPP08247 313 aa8.52□□□□□ -1.05
VPS29-212ENST00000621131 C1QTNF9P0C862 333 aa8.52□□□□□ -1.05
VPS29-212ENST00000621131 TRIM26Q12899 539 aaPredicted RBP8.52□□□□□ -1.05
VPS29-212ENST00000621131 ZPBP2Q6X784 338 aa8.52□□□□□ -1.05
VPS29-212ENST00000621131 DHRS1Q96LJ7 313 aa8.52□□□□□ -1.05
VPS29-212ENST00000621131 FERD3LQ96RJ6 166 aa8.52□□□□□ -1.05
VPS29-212ENST00000621131 PCDHB12Q9Y5F1 795 aa8.52□□□□□ -1.05
VPS29-212ENST00000621131 SSU72P8A0A1W2PR75 194 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 EFEMP2O95967 443 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 CTSKP43235 329 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 KIR2DL1P43626 348 aaPredicted RBP8.51□□□□□ -1.05
VPS29-212ENST00000621131 KIR2DL2P43627 348 aaPredicted RBP8.51□□□□□ -1.05
VPS29-212ENST00000621131 IRF2BP1Q8IU81 584 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 ZNF654Q8IZM8 581 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 MAP6Q96JE9 813 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 TM9SF2Q99805 663 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 SLC6A17Q9H1V8 727 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 GFOD1Q9NXC2 390 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 PRR13Q9NZ81 148 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 GPR160Q9UJ42 338 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 ZMYM5Q9UJ78 669 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 FBXL21Q9UKT6 434 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 PPT2Q9UMR5 302 aa8.51□□□□□ -1.05
VPS29-212ENST00000621131 FAM86C2PA6NEL3 165 aa8.5□□□□□ -1.05
VPS29-212ENST00000621131 SHOXO15266 292 aa8.5□□□□□ -1.05
VPS29-212ENST00000621131 PAK2Q13177 524 aa8.5□□□□□ -1.05
VPS29-212ENST00000621131 NLRX1Q86UT6 975 aa8.5□□□□□ -1.05
VPS29-212ENST00000621131 C7orf61Q8IZ16 206 aa8.5□□□□□ -1.05
VPS29-212ENST00000621131 INTS4Q96HW7 963 aaKnown RBP8.5□□□□□ -1.05
VPS29-212ENST00000621131 NRDCO43847 1150 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 FKTNO75072 461 aa8.49□□□□□ -1.05
VPS29-212ENST00000621131 USP2O75604 605 aaPredicted RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms