RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 TOP1P11387 765 aaKnown RBP21.37■■□□□ 1.01
LIG1-216ENST00000598938 HOXD10P28358 340 aa21.37■■□□□ 1.01
LIG1-216ENST00000598938 ANTXR2P58335 489 aa21.37■■□□□ 1.01
LIG1-216ENST00000598938 KLRC3Q07444 240 aa21.37■■□□□ 1.01
LIG1-216ENST00000598938 COL9A3Q14050 684 aaPredicted RBP21.37■■□□□ 1.01
LIG1-216ENST00000598938 ADCK5Q3MIX3 580 aa21.37■■□□□ 1.01
LIG1-216ENST00000598938 C17orf99Q6UX52 265 aa21.37■■□□□ 1.01
LIG1-216ENST00000598938 ENAHQ8N8S7 591 aaPredicted RBP21.37■■□□□ 1.01
LIG1-216ENST00000598938 TMEM47Q9BQJ4 181 aa21.37■■□□□ 1.01
LIG1-216ENST00000598938 UBAC1Q9BSL1 405 aa21.37■■□□□ 1.01
LIG1-216ENST00000598938 MGAMO43451 1857 aa21.37■■□□□ 1.01
LIG1-216ENST00000598938 USP17L15C9J2P7 530 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 USP17L13C9JLJ4 530 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 USP17L11C9JVI0 530 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 USP17L18D6R9N7 530 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 USP17L22D6RA61 530 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 USP17L17D6RBQ6 530 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 USP17L19D6RCP7 530 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 USP17L20D6RJB6 530 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 WDR46O15213 610 aaKnown RBP21.36■■□□□ 1.01
LIG1-216ENST00000598938 NDUFB10O96000 172 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 MCCP23508 829 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 USP17L24Q0WX57 530 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 SEC23AQ15436 765 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 SPICE1Q8N0Z3 855 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 NEK1Q96PY6 1258 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 PARK7Q99497 189 aaKnown RBP21.36■■□□□ 1.01
LIG1-216ENST00000598938 RPAP3Q9H6T3 665 aaPredicted RBP21.36■■□□□ 1.01
LIG1-216ENST00000598938 SRRDQ9UH36 339 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 PNMA3Q9UL41 463 aa21.36■■□□□ 1.01
LIG1-216ENST00000598938 ADGRA2Q96PE1 1338 aa21.35■■□□□ 1.01
LIG1-216ENST00000598938 MCM5P33992 734 aa21.35■■□□□ 1.01
LIG1-216ENST00000598938 CATSPERGQ6ZRH7 1159 aa21.35■■□□□ 1.01
LIG1-216ENST00000598938 SHISA4Q96DD7 197 aa21.35■■□□□ 1.01
LIG1-216ENST00000598938 MTA3Q9BTC8 594 aa21.35■■□□□ 1.01
LIG1-216ENST00000598938 ASCC2Q9H1I8 757 aaPredicted RBP21.35■■□□□ 1.01
LIG1-216ENST00000598938 PRC1O43663 620 aa21.34■■□□□ 1.01
LIG1-216ENST00000598938 CYP2C8P10632 490 aa21.34■■□□□ 1.01
LIG1-216ENST00000598938 OSBPP22059 807 aa21.34■■□□□ 1.01
LIG1-216ENST00000598938 SLFN13Q68D06 897 aa21.34■■□□□ 1.01
LIG1-216ENST00000598938 CHST3Q7LGC8 479 aa21.34■■□□□ 1.01
LIG1-216ENST00000598938 GMCL1Q96IK5 515 aa21.34■■□□□ 1.01
LIG1-216ENST00000598938 HTATIP2Q9BUP3 242 aa21.34■■□□□ 1.01
LIG1-216ENST00000598938 WDR19Q8NEZ3 1342 aa21.33■■□□□ 1.01
LIG1-216ENST00000598938 IFIT3O14879 490 aaKnown RBP21.33■■□□□ 1.01
LIG1-216ENST00000598938 RAD21O60216 631 aa21.33■■□□□ 1.01
LIG1-216ENST00000598938 MYCP01106 439 aaPredicted RBP21.33■■□□□ 1.01
LIG1-216ENST00000598938 CAPN2P17655 700 aa21.33■■□□□ 1.01
LIG1-216ENST00000598938 GRK4P32298 578 aa21.33■■□□□ 1.01
LIG1-216ENST00000598938 PSMC4P43686 418 aa21.33■■□□□ 1.01
LIG1-216ENST00000598938 IRX3P78415 501 aaPredicted RBP21.33■■□□□ 1.01
LIG1-216ENST00000598938 EXOSC10Q01780 885 aaKnown RBP21.33■■□□□ 1.01
LIG1-216ENST00000598938 SART3Q15020 963 aaKnown RBP21.33■■□□□ 1.01
LIG1-216ENST00000598938 FAM83BQ5T0W9 1011 aa21.33■■□□□ 1.01
LIG1-216ENST00000598938 IGDCC4Q8TDY8 1250 aa21.33■■□□□ 1.01
LIG1-216ENST00000598938 ERICH2A1L162 156 aa21.32■■□□□ 1
LIG1-216ENST00000598938 GJB1P08034 283 aa21.32■■□□□ 1
LIG1-216ENST00000598938 HMGB1P09429 215 aaKnown RBP21.32■■□□□ 1
LIG1-216ENST00000598938 GJA8P48165 433 aa21.32■■□□□ 1
LIG1-216ENST00000598938 IFIT1BQ5T764 474 aaKnown RBP21.32■■□□□ 1
LIG1-216ENST00000598938 UBE2Q1Q7Z7E8 422 aa21.32■■□□□ 1
LIG1-216ENST00000598938 RAET1EQ8TD07 263 aa21.32■■□□□ 1
LIG1-216ENST00000598938 TMEM87BQ96K49 555 aa21.32■■□□□ 1
LIG1-216ENST00000598938 TRIM47Q96LD4 638 aa21.32■■□□□ 1
LIG1-216ENST00000598938 JAKMIP1Q96N16 626 aaKnown RBP21.32■■□□□ 1
LIG1-216ENST00000598938 NUP88Q99567 741 aaPredicted RBP21.32■■□□□ 1
LIG1-216ENST00000598938 P2RX7Q99572 595 aaKnown RBP21.32■■□□□ 1
LIG1-216ENST00000598938 TANGO6Q9C0B7 1094 aa21.32■■□□□ 1
LIG1-216ENST00000598938 KAT14Q9H8E8 782 aa21.32■■□□□ 1
LIG1-216ENST00000598938 RANBP2P49792 3224 aaKnown RBP21.31■■□□□ 1
LIG1-216ENST00000598938 SZT2Q5T011 3432 aa21.31■■□□□ 1
LIG1-216ENST00000598938 HERVK_113P62684 666 aa21.31■■□□□ 1
LIG1-216ENST00000598938 WTAPQ15007 396 aa21.31■■□□□ 1
LIG1-216ENST00000598938 TMEM67Q5HYA8 995 aa21.31■■□□□ 1
LIG1-216ENST00000598938 CHRDL2Q6WN34 429 aa21.31■■□□□ 1
LIG1-216ENST00000598938 DHX32Q7L7V1 743 aaKnown RBP21.31■■□□□ 1
LIG1-216ENST00000598938 PNMA1Q8ND90 353 aa21.31■■□□□ 1
LIG1-216ENST00000598938 DCAF4Q8WV16 495 aa21.31■■□□□ 1
LIG1-216ENST00000598938 SH2B2O14492 632 aaPredicted RBP21.3■■□□□ 1
LIG1-216ENST00000598938 SNHG28P0DPA3 235 aa21.3■■□□□ 1
LIG1-216ENST00000598938 BMP3P12645 472 aa21.3■■□□□ 1
LIG1-216ENST00000598938 PSMA5P28066 241 aa21.3■■□□□ 1
LIG1-216ENST00000598938 CTGFP29279 349 aa21.3■■□□□ 1
LIG1-216ENST00000598938 ANAPC15P60006 121 aa21.3■■□□□ 1
LIG1-216ENST00000598938 MTFR1Q15390 333 aa21.3■■□□□ 1
LIG1-216ENST00000598938 LBX2Q6XYB7 198 aa21.3■■□□□ 1
LIG1-216ENST00000598938 RASGRP2Q7LDG7 609 aa21.3■■□□□ 1
LIG1-216ENST00000598938 SMCR8Q8TEV9 937 aaPredicted RBP21.3■■□□□ 1
LIG1-216ENST00000598938 IL17RAQ96F46 866 aa21.3■■□□□ 1
LIG1-216ENST00000598938 LY9Q9HBG7 655 aa21.3■■□□□ 1
LIG1-216ENST00000598938 SENP2Q9HC62 589 aa21.3■■□□□ 1
LIG1-216ENST00000598938 CPA4Q9UI42 421 aa21.3■■□□□ 1
LIG1-216ENST00000598938 MYPNQ86TC9 1320 aa21.29■■□□□ 1
LIG1-216ENST00000598938 RLFQ13129 1914 aa21.29■■□□□ 1
LIG1-216ENST00000598938 SPDYE16A6NNV3 312 aaPredicted RBP21.29■■□□□ 1
LIG1-216ENST00000598938 PDHBP11177 359 aa21.29■■□□□ 1
LIG1-216ENST00000598938 SLC1A4P43007 532 aa21.29■■□□□ 1
LIG1-216ENST00000598938 GCLCP48506 637 aaPredicted RBP21.29■■□□□ 1
LIG1-216ENST00000598938 UBXN2AP68543 259 aa21.29■■□□□ 1
LIG1-216ENST00000598938 COG2Q14746 738 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms