RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ERCC3P19447 782 aa16.88■□□□□ 0.29
SHKBP1-218ENST00000598907 MRE11P49959 708 aa16.88■□□□□ 0.29
SHKBP1-218ENST00000598907 RASIP1Q5U651 963 aa16.88■□□□□ 0.29
SHKBP1-218ENST00000598907 PSRC1Q6PGN9 363 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-218ENST00000598907 XAGE2Q96GT9 111 aa16.88■□□□□ 0.29
SHKBP1-218ENST00000598907 GINM1Q9NU53 330 aa16.88■□□□□ 0.29
SHKBP1-218ENST00000598907 TBX21Q9UL17 535 aa16.88■□□□□ 0.29
SHKBP1-218ENST00000598907 FOCADQ5VW36 1801 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 A0A1B0GUL7 405 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 USP14P54578 494 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 PLS1Q14651 629 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 LBX2Q6XYB7 198 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 ANKRD33Q7Z3H0 272 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 FOXP4Q8IVH2 680 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 SPATA5Q8NB90 893 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 ACER1Q8TDN7 264 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 MAML3Q96JK9 1138 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 SLC5A4Q9NY91 659 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 FBXO3Q9UK99 471 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 CHD7Q9P2D1 2997 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 A0A0G2JMZ2 1700 aa16.87■□□□□ 0.29
SHKBP1-218ENST00000598907 SRGAP3O43295 1099 aa16.86■□□□□ 0.29
SHKBP1-218ENST00000598907 IGHDP01880 384 aa16.86■□□□□ 0.29
SHKBP1-218ENST00000598907 HLA-DOAP06340 250 aa16.86■□□□□ 0.29
SHKBP1-218ENST00000598907 PPP2R2DQ66LE6 453 aa16.86■□□□□ 0.29
SHKBP1-218ENST00000598907 NCAPG2Q86XI2 1143 aa16.86■□□□□ 0.29
SHKBP1-218ENST00000598907 TANGO6Q9C0B7 1094 aa16.86■□□□□ 0.29
SHKBP1-218ENST00000598907 SPATC1LQ9H0A9 340 aa16.86■□□□□ 0.29
SHKBP1-218ENST00000598907 LRP2BPQ9P2M1 347 aa16.86■□□□□ 0.29
SHKBP1-218ENST00000598907 ERC2O15083 957 aa16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 ZBTB22O15209 634 aa16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 STRNO43815 780 aa16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 TAL1P17542 331 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 ACLYP53396 1101 aa16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 RABGGTBP53611 331 aa16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 METTL16Q86W50 562 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 TMEM199Q8N511 208 aa16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 NEUROD6Q96NK8 337 aa16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 TOX2Q96NM4 488 aa16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 KIAA1683Q9H0B3 1180 aa16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 RWDD1Q9H446 243 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-218ENST00000598907 SMCHD1A6NHR9 2005 aa16.84■□□□□ 0.29
SHKBP1-218ENST00000598907 GPR37L1O60883 481 aa16.84■□□□□ 0.29
SHKBP1-218ENST00000598907 HMMRO75330 724 aa16.84■□□□□ 0.29
SHKBP1-218ENST00000598907 BAG3O95817 575 aa16.84■□□□□ 0.29
SHKBP1-218ENST00000598907 GORABQ5T7V8 394 aa16.84■□□□□ 0.29
SHKBP1-218ENST00000598907 NAA16Q6N069 864 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-218ENST00000598907 SAMD1Q6SPF0 538 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-218ENST00000598907 DCTPP1Q9H773 170 aa16.84■□□□□ 0.29
SHKBP1-218ENST00000598907 RFXAPO00287 272 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 ADAMTS4O75173 837 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 MYOGP15173 224 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 TFCP2Q12800 502 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 ADGRA1Q86SQ6 560 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 SHCBP1Q8NEM2 672 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 NUP133Q8WUM0 1156 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 HERVK_113Q902F9 699 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 COPRSQ9NQ92 184 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 SYNRGQ9UMZ2 1314 aa16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 NOP58Q9Y2X3 529 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-218ENST00000598907 PGK2P07205 417 aa16.82■□□□□ 0.28
SHKBP1-218ENST00000598907 PLCG2P16885 1265 aa16.82■□□□□ 0.28
SHKBP1-218ENST00000598907 CYP2C18P33260 490 aa16.82■□□□□ 0.28
SHKBP1-218ENST00000598907 OTOP2Q7RTS6 562 aa16.82■□□□□ 0.28
SHKBP1-218ENST00000598907 CCDC136Q96JN2 1154 aa16.82■□□□□ 0.28
SHKBP1-218ENST00000598907 UIMC1Q96RL1 719 aa16.82■□□□□ 0.28
SHKBP1-218ENST00000598907 MTIF3Q9H2K0 278 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-218ENST00000598907 ROBO3Q96MS0 1386 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 MROH7Q68CQ1 1323 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 MYADML2A6NDP7 307 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 SMIM22K7EJ46 135 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 AKR1A1P14550 325 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 ABCB5Q2M3G0 1257 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 KRT40Q6A162 431 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 B4GALNT3Q6L9W6 998 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 SMC5Q8IY18 1101 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 VTI1AQ96AJ9 217 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 MROH8Q9H579 483 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 CERS4Q9HA82 394 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 IL23AQ9NPF7 189 aa16.81■□□□□ 0.28
SHKBP1-218ENST00000598907 MYH1P12882 1939 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 GTPBP6O43824 516 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 TLL1O43897 1013 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 FCER1AP12319 257 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 MCAMP43121 646 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 IRX5P78411 483 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 COG2Q14746 738 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 KCNA10Q16322 511 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 GLT1D1Q96MS3 346 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 TINF2Q9BSI4 451 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 TSEN34Q9BSV6 310 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 SNRKQ9NRH2 765 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 NRBP1Q9UHY1 535 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 AKAP2Q9Y2D5 859 aa16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 PRRC2BQ5JSZ5 2229 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-218ENST00000598907 FGBP02675 491 aa16.79■□□□□ 0.28
SHKBP1-218ENST00000598907 DYNLL1P63167 89 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-218ENST00000598907 CERKLQ49MI3 558 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-218ENST00000598907 TATDN1Q6P1N9 297 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms