RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 PTPRAP18433 802 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 ECE1P42892 770 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 USP14P54578 494 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 HTRA3P83110 453 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 MAP3K11Q16584 847 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 IFFO2Q5TF58 517 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 ANKRD13AQ8IZ07 590 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 CMTR1Q8N1G2 835 aaKnown RBP17.91■□□□□ 0.46
UPF1-206ENST00000598471 STAG2Q8N3U4 1231 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 CCDC82Q8N4S0 544 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 SRBD1Q8N5C6 995 aaKnown RBP17.91■□□□□ 0.46
UPF1-206ENST00000598471 SPZ1Q9BXG8 430 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 FZD1Q9UP38 647 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 FRMPD2Q68DX3 1309 aaPredicted RBP17.91■□□□□ 0.46
UPF1-206ENST00000598471 CNTNAP5Q8WYK1 1306 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 USP17L10C9JJH3 530 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 PRPF3O43395 683 aaKnown RBP17.9■□□□□ 0.46
UPF1-206ENST00000598471 GOLGA8HP0CJ92 632 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 BMP3P12645 472 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 HSPA6P17066 643 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 XBP1P17861 261 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 SYT1P21579 422 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 TRIM29Q14134 588 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 VGLL4Q14135 290 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 NBPF11Q86T75 865 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 ZNF280CQ8ND82 737 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 RGS22Q8NE09 1264 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 LPAR1Q92633 364 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 C8orf76Q96K31 380 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 ALG1Q9BT22 464 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 KIAA1683Q9H0B3 1180 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 ZNF408Q9H9D4 720 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 GPCPD1Q9NPB8 672 aa17.9■□□□□ 0.46
UPF1-206ENST00000598471 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.9■□□□□ 0.46
UPF1-206ENST00000598471 VPS37CA5D8V6 355 aaPredicted RBP17.89■□□□□ 0.45
UPF1-206ENST00000598471 UNCXA6NJT0 531 aa17.89■□□□□ 0.45
UPF1-206ENST00000598471 DTNBO60941 627 aa17.89■□□□□ 0.45
UPF1-206ENST00000598471 PPFIA3O75145 1194 aa17.89■□□□□ 0.45
UPF1-206ENST00000598471 FDPSP14324 419 aaKnown RBP17.89■□□□□ 0.45
UPF1-206ENST00000598471 FKBP1BP68106 108 aa17.89■□□□□ 0.45
UPF1-206ENST00000598471 FUT2Q10981 343 aa17.89■□□□□ 0.45
UPF1-206ENST00000598471 CST9Q5W186 159 aa17.89■□□□□ 0.45
UPF1-206ENST00000598471 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.89■□□□□ 0.45
UPF1-206ENST00000598471 CCDC84Q86UT8 332 aaPredicted RBP17.89■□□□□ 0.45
UPF1-206ENST00000598471 SNCAIPQ9Y6H5 919 aa17.89■□□□□ 0.45
UPF1-206ENST00000598471 ZHX2Q9Y6X8 837 aa17.89■□□□□ 0.45
UPF1-206ENST00000598471 APLP1P51693 650 aa17.88■□□□□ 0.45
UPF1-206ENST00000598471 IKQ13123 557 aaPredicted RBP17.88■□□□□ 0.45
UPF1-206ENST00000598471 ZYXQ15942 572 aaKnown RBP17.88■□□□□ 0.45
UPF1-206ENST00000598471 KCTD1Q719H9 257 aa17.88■□□□□ 0.45
UPF1-206ENST00000598471 RASGRP2Q7LDG7 609 aa17.88■□□□□ 0.45
UPF1-206ENST00000598471 RRP36Q96EU6 259 aaKnown RBP17.88■□□□□ 0.45
UPF1-206ENST00000598471 SEC63Q9UGP8 760 aaKnown RBP17.88■□□□□ 0.45
UPF1-206ENST00000598471 V9GY48 417 aaPredicted RBP17.88■□□□□ 0.45
UPF1-206ENST00000598471 PAPPA2Q9BXP8 1791 aa17.87■□□□□ 0.45
UPF1-206ENST00000598471 C19orf81C9J6K1 198 aa17.87■□□□□ 0.45
UPF1-206ENST00000598471 BRD1O95696 1058 aa17.87■□□□□ 0.45
UPF1-206ENST00000598471 ZSCAN22P10073 491 aaPredicted RBP17.87■□□□□ 0.45
UPF1-206ENST00000598471 SPP2Q13103 211 aa17.87■□□□□ 0.45
UPF1-206ENST00000598471 SPICE1Q8N0Z3 855 aa17.87■□□□□ 0.45
UPF1-206ENST00000598471 WDR46O15213 610 aaKnown RBP17.86■□□□□ 0.45
UPF1-206ENST00000598471 SCG2P13521 617 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 BACE1P56817 501 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 MTMR2Q13614 643 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 FAM160B2Q86V87 743 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 ERO1BQ86YB8 467 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 C2orf69Q8N8R5 385 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 CHURC1Q8WUH1 139 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 UBA5Q9GZZ9 404 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 RIOX1Q9H6W3 641 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 ELP3Q9H9T3 547 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 GBA2Q9HCG7 927 aaPredicted RBP17.86■□□□□ 0.45
UPF1-206ENST00000598471 TMOD4Q9NZQ9 345 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 MTMR6Q9Y217 621 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 OTOFQ9HC10 1997 aa17.86■□□□□ 0.45
UPF1-206ENST00000598471 TRIM75PA6NK02 468 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 TMEM232C9JQI7 657 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 hCG_1984214I3L0E3 225 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 CELF2O95319 508 aaKnown RBP17.85■□□□□ 0.45
UPF1-206ENST00000598471 STAT2P52630 851 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 FOSBP53539 338 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 PPATQ06203 517 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 PFKFB3Q16875 520 aaPredicted RBP17.85■□□□□ 0.45
UPF1-206ENST00000598471 FAM83BQ5T0W9 1011 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 LDLRAD1Q5T700 205 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 MOB2Q70IA6 237 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 ZNF713Q8N859 430 aaPredicted RBP17.85■□□□□ 0.45
UPF1-206ENST00000598471 PIBF1Q8WXW3 757 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 NUP88Q99567 741 aaPredicted RBP17.85■□□□□ 0.45
UPF1-206ENST00000598471 FEM1BQ9UK73 627 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 AFG3L2Q9Y4W6 797 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 ATP6V1DQ9Y5K8 247 aa17.85■□□□□ 0.45
UPF1-206ENST00000598471 SPDYE5A6NIY4 337 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 UBE2Q2LH0YL09 131 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 CYTH3O43739 400 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 PLA2G6O60733 806 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 PKP1Q13835 747 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 SAFBQ15424 915 aaKnown RBP eCLIP17.84■□□□□ 0.45
UPF1-206ENST00000598471 SYDE2Q5VT97 1194 aa17.84■□□□□ 0.45
UPF1-206ENST00000598471 TTBK2Q6IQ55 1244 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms