RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 LRRC2Q9BYS8 371 aa14.76□□□□□ -0.05
VMP1-202ENST00000585847 C19orf81C9J6K1 198 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 IGF2BP3O00425 579 aaKnown RBP eCLIP14.75□□□□□ -0.05
VMP1-202ENST00000585847 SH2B2O14492 632 aaPredicted RBP14.75□□□□□ -0.05
VMP1-202ENST00000585847 CDKL5O76039 1030 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 TM4SF4P48230 202 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 HMGCS2P54868 508 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 HMGN5P82970 282 aaKnown RBP14.75□□□□□ -0.05
VMP1-202ENST00000585847 SNAPC2Q13487 334 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 TOB2Q14106 344 aaPredicted RBP14.75□□□□□ -0.05
VMP1-202ENST00000585847 ZYXQ15942 572 aaKnown RBP14.75□□□□□ -0.05
VMP1-202ENST00000585847 CPLX2Q6PUV4 134 aaKnown RBP14.75□□□□□ -0.05
VMP1-202ENST00000585847 SYNE3Q6ZMZ3 975 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 Q6ZUG5 572 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 DGKHQ86XP1 1220 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 GTF3C6Q969F1 213 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 VCPKMTQ9H867 229 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 LY9Q9HBG7 655 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 ARHGEF10LQ9HCE6 1279 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 PCDH10Q9P2E7 1040 aa14.75□□□□□ -0.05
VMP1-202ENST00000585847 CCL15-CCL14A0A0B4J2E2 113 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 CCDC196A0A1B0GTZ2 297 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 MANSC4A6NHS7 340 aaPredicted RBP14.74□□□□□ -0.05
VMP1-202ENST00000585847 BTBD19C9JJ37 291 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 PFKFB2O60825 505 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 CALM1P0DP23 149 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 CALM2P0DP24 149 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 CALM3P0DP25 149 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 GTF2A2P52657 109 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 ATP2B2Q01814 1243 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 CCL15Q16663 113 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 TREML2Q5T2D2 321 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 USP17L2Q6R6M4 530 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 BRF1Q92994 677 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 SLKQ9H2G2 1235 aaPredicted RBP14.74□□□□□ -0.05
VMP1-202ENST00000585847 STX8Q9UNK0 236 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 PDE4DIPQ5VU43 2346 aa14.74□□□□□ -0.05
VMP1-202ENST00000585847 F5H6K3 240 aa14.73□□□□□ -0.05
VMP1-202ENST00000585847 IFIT3O14879 490 aaKnown RBP14.73□□□□□ -0.05
VMP1-202ENST00000585847 NDUFB10O96000 172 aa14.73□□□□□ -0.05
VMP1-202ENST00000585847 TOP1P11387 765 aaKnown RBP14.73□□□□□ -0.05
VMP1-202ENST00000585847 PTMSP20962 102 aa14.73□□□□□ -0.05
VMP1-202ENST00000585847 KLRC3Q07444 240 aa14.73□□□□□ -0.05
VMP1-202ENST00000585847 FAM43AQ8N2R8 423 aa14.73□□□□□ -0.05
VMP1-202ENST00000585847 PROCA1Q8NCQ7 364 aaPredicted RBP14.73□□□□□ -0.05
VMP1-202ENST00000585847 GMCL1P1Q8NEA9 526 aa14.73□□□□□ -0.05
VMP1-202ENST00000585847 SYNPO2Q9UMS6 1093 aa14.73□□□□□ -0.05
VMP1-202ENST00000585847 SMC3Q9UQE7 1217 aa14.73□□□□□ -0.05
VMP1-202ENST00000585847 SNHG28P0DPA3 235 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 CETPP11597 493 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 VCAM1P19320 739 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 USP14P54578 494 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 TMEM67Q5HYA8 995 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 POTEEQ6S8J3 1075 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 GADL1Q6ZQY3 521 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 IFNL1Q8IU54 200 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 MAP3K14Q99558 947 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 FEZ1Q99689 392 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 TPCN1Q9ULQ1 816 aa14.72□□□□□ -0.05
VMP1-202ENST00000585847 CCDC69A6NI79 296 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 DDAH1O94760 285 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 SLC4A3P48751 1232 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 WTAPQ15007 396 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 PKN2Q16513 984 aaKnown RBP14.71□□□□□ -0.05
VMP1-202ENST00000585847 ME3Q16798 604 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 IFIT1BQ5T764 474 aaKnown RBP14.71□□□□□ -0.05
VMP1-202ENST00000585847 SLFN13Q68D06 897 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 FASTKD5Q7L8L6 764 aaKnown RBP14.71□□□□□ -0.05
VMP1-202ENST00000585847 ANKRD23Q86SG2 305 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 SPICE1Q8N0Z3 855 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 NUP88Q99567 741 aaPredicted RBP14.71□□□□□ -0.05
VMP1-202ENST00000585847 BRPF3Q9ULD4 1205 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 AGTPBP1Q9UPW5 1226 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 ATP6V1DQ9Y5K8 247 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 SLC12A7Q9Y666 1083 aa14.71□□□□□ -0.05
VMP1-202ENST00000585847 GOLGA8BA8MQT2 603 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 TBC1D8O95759 1140 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 PDHBP11177 359 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 HOXA7P31268 230 aaPredicted RBP14.7□□□□□ -0.06
VMP1-202ENST00000585847 INHBEP58166 350 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 PNMA1Q8ND90 353 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 LPAR1Q92633 364 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 GMCL1Q96IK5 515 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 GBP4Q96PP9 640 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 RPAP3Q9H6T3 665 aaPredicted RBP14.7□□□□□ -0.06
VMP1-202ENST00000585847 SH2D4AQ9H788 454 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 TMOD4Q9NZQ9 345 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 RBM27Q9P2N5 1060 aaKnown RBP14.7□□□□□ -0.06
VMP1-202ENST00000585847 HPS5Q9UPZ3 1129 aa14.7□□□□□ -0.06
VMP1-202ENST00000585847 ADGRA2Q96PE1 1338 aa14.69□□□□□ -0.06
VMP1-202ENST00000585847 KLF18A0A0U1RQI7 1052 aa14.69□□□□□ -0.06
VMP1-202ENST00000585847 WDR46O15213 610 aaKnown RBP14.69□□□□□ -0.06
VMP1-202ENST00000585847 ZBTB43O43298 467 aa14.69□□□□□ -0.06
VMP1-202ENST00000585847 PDIA3P30101 505 aaKnown RBP14.69□□□□□ -0.06
VMP1-202ENST00000585847 SREBF2Q12772 1141 aa14.69□□□□□ -0.06
VMP1-202ENST00000585847 TROAPQ12815 778 aa14.69□□□□□ -0.06
VMP1-202ENST00000585847 FAM83BQ5T0W9 1011 aa14.69□□□□□ -0.06
VMP1-202ENST00000585847 APOA5Q6Q788 366 aa14.69□□□□□ -0.06
VMP1-202ENST00000585847 NFXL1Q6ZNB6 911 aa14.69□□□□□ -0.06
VMP1-202ENST00000585847 CATSPERGQ6ZRH7 1159 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms