RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 NRDCO43847 1150 aa6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 FZD7O75084 574 aa6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 MPOP05164 745 aa6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 NCKAP1LP55160 1127 aa6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 TMEM62Q0P6H9 643 aa6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 TPTE2Q6XPS3 522 aa6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 NPM2Q86SE8 214 aaKnown RBP6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 DTWD2Q8NBA8 298 aa6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 SPATA25Q9BR10 227 aa6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 CEP44Q9C0F1 390 aa6.36□□□□□ -1.39
SMCHD1-209ENST00000583441 ENC1O14682 589 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 NDUFB5O43674 189 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 PAGE1O75459 146 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 USP2O75604 605 aaPredicted RBP6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 GRK4P32298 578 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 TTC9BQ8N6N2 239 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 SAMD11Q96NU1 681 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 DPH2Q9BQC3 489 aaPredicted RBP6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 G6PC3Q9BUM1 346 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 NIF3L1Q9GZT8 377 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 KLHL14Q9P2G3 628 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 ZMYM5Q9UJ78 669 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 DCTN4Q9UJW0 460 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 CYP8B1Q9UNU6 501 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 SNCAIPQ9Y6H5 919 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 DUSP10Q9Y6W6 482 aa6.35□□□□□ -1.39
SMCHD1-209ENST00000583441 ERVFRD-1P60508 538 aa6.34□□□□□ -1.39
SMCHD1-209ENST00000583441 CEP128Q6ZU80 1094 aa6.34□□□□□ -1.39
SMCHD1-209ENST00000583441 SH3RF3Q8TEJ3 882 aaPredicted RBP6.34□□□□□ -1.39
SMCHD1-209ENST00000583441 RBM15Q96T37 977 aaKnown RBP eCLIP6.34□□□□□ -1.39
SMCHD1-209ENST00000583441 RPL10P27635 214 aaKnown RBP6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 WIPI1Q5MNZ9 446 aaPredicted RBP6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 CRIP3Q6Q6R5 217 aa6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 LIPIQ6XZB0 460 aa6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 SPRED1Q7Z699 444 aa6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 ZSCAN29Q8IWY8 852 aaPredicted RBP6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 ADGRG2Q8IZP9 1017 aa6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 CHST13Q8NET6 341 aa6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 FAM129BQ96TA1 746 aa6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 SUSD2Q9UGT4 822 aa6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 CEP131Q9UPN4 1083 aa6.33□□□□□ -1.4
SMCHD1-209ENST00000583441 A0A1B0GTL3 188 aa6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 MAPK1P28482 360 aa6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 KIR2DL1P43626 348 aaPredicted RBP6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 KIR2DL2P43627 348 aaPredicted RBP6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 LIMS1P48059 325 aa6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 ARHGAP4P98171 946 aa6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 RAB3GAP1Q15042 981 aa6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 RASIP1Q5U651 963 aa6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 PI16Q6UXB8 463 aa6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 DNAJC14Q6Y2X3 702 aaPredicted RBP6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 DNAJB8Q8NHS0 232 aa6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 CITED4Q96RK1 184 aa6.32□□□□□ -1.4
SMCHD1-209ENST00000583441 PFKLP17858 780 aa6.31□□□□□ -1.4
SMCHD1-209ENST00000583441 PTPN11Q06124 597 aaPredicted RBP6.31□□□□□ -1.4
SMCHD1-209ENST00000583441 TMC1Q8TDI8 760 aa6.31□□□□□ -1.4
SMCHD1-209ENST00000583441 DVL3Q92997 716 aaPredicted RBP6.31□□□□□ -1.4
SMCHD1-209ENST00000583441 ASB16Q96NS5 453 aa6.31□□□□□ -1.4
SMCHD1-209ENST00000583441 PCED1AQ9H1Q7 454 aa6.31□□□□□ -1.4
SMCHD1-209ENST00000583441 ZNF281Q9Y2X9 895 aa6.31□□□□□ -1.4
SMCHD1-209ENST00000583441 ARL4AP40617 200 aa6.3□□□□□ -1.4
SMCHD1-209ENST00000583441 VWA3BQ502W6 1294 aa6.3□□□□□ -1.4
SMCHD1-209ENST00000583441 SLC6A19Q695T7 634 aa6.3□□□□□ -1.4
SMCHD1-209ENST00000583441 NXPE4Q6UWF7 544 aa6.3□□□□□ -1.4
SMCHD1-209ENST00000583441 MRPL41Q8IXM3 137 aaKnown RBP6.3□□□□□ -1.4
SMCHD1-209ENST00000583441 RBCK1Q9BYM8 510 aa6.3□□□□□ -1.4
SMCHD1-209ENST00000583441 BCL11AQ9H165 835 aa6.3□□□□□ -1.4
SMCHD1-209ENST00000583441 CLEC16AQ2KHT3 1053 aa6.29□□□□□ -1.4
SMCHD1-209ENST00000583441 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.29□□□□□ -1.4
SMCHD1-209ENST00000583441 WAPLQ7Z5K2 1190 aa6.29□□□□□ -1.4
SMCHD1-209ENST00000583441 MAP6Q96JE9 813 aa6.29□□□□□ -1.4
SMCHD1-209ENST00000583441 TMEM87BQ96K49 555 aa6.29□□□□□ -1.4
SMCHD1-209ENST00000583441 TJP2Q9UDY2 1190 aa6.29□□□□□ -1.4
SMCHD1-209ENST00000583441 ANKRD33BA6NCL7 494 aa6.28□□□□□ -1.4
SMCHD1-209ENST00000583441 GJA9P57773 515 aa6.28□□□□□ -1.4
SMCHD1-209ENST00000583441 LNPKQ9C0E8 428 aa6.28□□□□□ -1.4
SMCHD1-209ENST00000583441 RBM47A0AV96 593 aaKnown RBP6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 NUDT19A8MXV4 375 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 NOBOXO60393 691 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 LRRN2O75325 713 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 FBXO24O75426 580 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 CDK8P49336 464 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 PCNX4Q63HM2 1172 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 C3orf58Q8NDZ4 430 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 KISS1RQ969F8 398 aaPredicted RBP6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 DMRTB1Q96MA1 342 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 PLCD4Q9BRC7 762 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 VPS11Q9H270 941 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 C11orf21Q9P2W6 132 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 TACC3Q9Y6A5 838 aa6.27□□□□□ -1.41
SMCHD1-209ENST00000583441 GPR182O15218 404 aa6.26□□□□□ -1.41
SMCHD1-209ENST00000583441 PGRP06401 933 aa6.26□□□□□ -1.41
SMCHD1-209ENST00000583441 IGFBP6P24592 240 aaPredicted RBP6.26□□□□□ -1.41
SMCHD1-209ENST00000583441 RNF111Q6ZNA4 994 aa6.26□□□□□ -1.41
SMCHD1-209ENST00000583441 FNIP1Q8TF40 1166 aa6.26□□□□□ -1.41
SMCHD1-209ENST00000583441 BCL2L13Q9BXK5 485 aa6.26□□□□□ -1.41
SMCHD1-209ENST00000583441 MSL3P1P0C860 447 aa6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 FBLN1P23142 703 aa6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 RBM25P49756 843 aaKnown RBP6.25□□□□□ -1.41
SMCHD1-209ENST00000583441 RTP1P59025 263 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms