RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	DNAJC21	Q5F1R6	531 aa	Known RBP	10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ANKRD20A12P	Q8NF67	263 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CTCFL	Q8NI51	663 aa	Predicted RBP	10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	COG1	Q8WTW3	980 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	MTR	Q99707	1265 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	UBAC1	Q9BSL1	405 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	SELENOO	Q9BVL4	669 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	KAT14	Q9H8E8	782 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	FBXO3	Q9UK99	471 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PDE2A	O00408	941 aa	Predicted RBP	10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PDE8B	O95263	885 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	AARS	P49588	968 aa	Known RBP eCLIP	10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	LIG3	P49916	1009 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ALX1	Q15699	326 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	E2F4	Q16254	413 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	MAP9	Q49MG5	647 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	TTC38	Q5R3I4	469 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	KIF6	Q6ZMV9	814 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	JAKMIP2	Q96AA8	810 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	DUSP10	Q9Y6W6	482 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	WDR17	Q8IZU2	1322 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CCDC196	A0A1B0GTZ2	297 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	MACROD2	A1Z1Q3	448 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	RCCD1	A6NED2	376 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	AGPS	O00116	658 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	TUBB	P07437	444 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PARP1	P09874	1014 aa	Known RBP	10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	EZH2	Q15910	746 aa	Known RBP	10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PKN1	Q16512	942 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	SPATA5	Q8NB90	893 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	RWDD2A	Q9UIY3	292 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	TRPM3	Q9HCF6	1732 aa	Predicted RBP	10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PSMD14	O00487	310 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	MCM7	P33993	719 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PRCP	P42785	496 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	MATR3	P43243	847 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	KLK7	P49862	253 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PPARA	Q07869	468 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	MAP3K12	Q12852	859 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CT47A1	Q5JQC4	288 aa	Predicted RBP	10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	VGLL2	Q8N8G2	317 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	OR8K1	Q8NGG5	319 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	SDR42E1	Q8WUS8	393 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	RRP36	Q96EU6	259 aa	Known RBP	10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PLIN2	Q99541	437 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	LACRT	Q9GZZ8	138 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	VIPAS39	Q9H9C1	493 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	JADE2	Q9NQC1	790 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	LUC7L2	Q9Y383	392 aa	Known RBP	10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	TNKS	O95271	1327 aa		10.75	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ADAMTS3	O15072	1205 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	XBP1	P17861	261 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CYP27A1	Q02318	531 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	RASGRF1	Q13972	1273 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	TSR1	Q2NL82	804 aa	Known RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	WDR59	Q6PJI9	974 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	TADA2B	Q86TJ2	420 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	FAM76A	Q8TAV0	307 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	SMCR8	Q8TEV9	937 aa	Predicted RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	STAG1	Q8WVM7	1258 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PHF20	Q9BVI0	1012 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	HAUS4	Q9H6D7	363 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	LRP6	O75581	1613 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	GOLGA6C	A6NDK9	693 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	GOLGA6D	P0CG33	693 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ARID4A	P29374	1257 aa	Predicted RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PMS1	P54277	932 aa	Known RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CTSW	P56202	376 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	SPAG1	Q07617	926 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	TRIM14	Q14142	442 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PIK3AP1	Q6ZUJ8	805 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PROSER2	Q86WR7	435 aa	Predicted RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	DNAJC10	Q8IXB1	793 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	EFCAB13	Q8IY85	973 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	MB21D1	Q8N884	522 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ZCRB1	Q8TBF4	217 aa	Known RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	FERMT2	Q96AC1	680 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	AGPAT5	Q9NUQ2	364 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	GOLGA6A	Q9NYA3	693 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CYP2D7	A0A087X1C5	515 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	LRRC10B	A6NIK2	292 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	EXOC5	O00471	708 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	IRS4	O14654	1257 aa	Predicted RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	RPN1	P04843	607 aa	Known RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	UQCRFS1P1	P0C7P4	283 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	IDE	P14735	1019 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	IL17A	Q16552	155 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PDXDC2P	Q6P474	469 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CCNI2	Q6ZMN8	369 aa	Predicted RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	SND1	Q7KZF4	910 aa	Known RBP eCLIP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	IRF2BP1	Q8IU81	584 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	HDAC7	Q8WUI4	952 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PSMB7	Q99436	277 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	NACAP1	Q9BZK3	213 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	POLD4	Q9HCU8	107 aa		10.74	□□□□□ -0.69
PPP4R1-222	ENST00000582594	SMARCAL1	Q9NZC9	954 aa		10.74	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms