RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 GOLGA8AA7E2F4 631 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 K7ELQ4 463 aaPredicted RBP11.12□□□□□ -0.63
RFFL-210ENST00000582308 PARP1P09874 1014 aaKnown RBP11.12□□□□□ -0.63
RFFL-210ENST00000582308 GOLGA8HP0CJ92 632 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 ADD1P35611 737 aaKnown RBP11.12□□□□□ -0.63
RFFL-210ENST00000582308 METAP2P50579 478 aaKnown RBP eCLIP11.12□□□□□ -0.63
RFFL-210ENST00000582308 USP14P54578 494 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 ZNF543Q08ER8 600 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 SCRN1Q12765 414 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 MKRN3Q13064 507 aaKnown RBP11.12□□□□□ -0.63
RFFL-210ENST00000582308 MOGSQ13724 837 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 SLC35G1Q2M3R5 365 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 TTBK2Q6IQ55 1244 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 KCTD1Q719H9 257 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 PRRT2Q7Z6L0 340 aaPredicted RBP11.12□□□□□ -0.63
RFFL-210ENST00000582308 HSCBQ8IWL3 235 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 LPAR1Q92633 364 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 GTF3C6Q969F1 213 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 HHIPL1Q96JK4 782 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 MS4A4AQ96JQ5 239 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 GPCPD1Q9NPB8 672 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 SH2B1Q9NRF2 756 aaPredicted RBP11.12□□□□□ -0.63
RFFL-210ENST00000582308 CREBZFQ9NS37 354 aa11.12□□□□□ -0.63
RFFL-210ENST00000582308 FRMPD2Q68DX3 1309 aaPredicted RBP11.11□□□□□ -0.63
RFFL-210ENST00000582308 FAM155AB1AL88 458 aaPredicted RBP11.11□□□□□ -0.63
RFFL-210ENST00000582308 DTNBO60941 627 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 PLEKHA8P1O95397 391 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 SLC10A3P09131 477 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 ZBTB48P10074 688 aaPredicted RBP11.11□□□□□ -0.63
RFFL-210ENST00000582308 BMP3P12645 472 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 VCAM1P19320 739 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 KIF5BP33176 963 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 ANP32AP39687 249 aaKnown RBP11.11□□□□□ -0.63
RFFL-210ENST00000582308 SLC1A4P43007 532 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 FUT2Q10981 343 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 SNAPC2Q13487 334 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 CUL4AQ13619 759 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 PPP2R5BQ15173 497 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 NTRK3Q16288 839 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 CCDC96Q2M329 555 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 ASPRV1Q53RT3 343 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 FAM83BQ5T0W9 1011 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 NBPF11Q86T75 865 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 CCDC83Q8IWF9 413 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 CMTR1Q8N1G2 835 aaKnown RBP11.11□□□□□ -0.63
RFFL-210ENST00000582308 CTCFLQ8NI51 663 aaPredicted RBP11.11□□□□□ -0.63
RFFL-210ENST00000582308 CPVLQ9H3G5 476 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 TMOD4Q9NZQ9 345 aa11.11□□□□□ -0.63
RFFL-210ENST00000582308 CCDC196A0A1B0GTZ2 297 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 KLRF2D3W0D1 207 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 WDR46O15213 610 aaKnown RBP11.1□□□□□ -0.63
RFFL-210ENST00000582308 CTDNEP1O95476 244 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 SLC16A2P36021 539 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 TREML2Q5T2D2 321 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 GPATCH4Q5T3I0 446 aaKnown RBP11.1□□□□□ -0.63
RFFL-210ENST00000582308 GPAT2Q6NUI2 795 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 GADL1Q6ZQY3 521 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 TMTC3Q6ZXV5 915 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 SRBD1Q8N5C6 995 aaKnown RBP11.1□□□□□ -0.63
RFFL-210ENST00000582308 PROCA1Q8NCQ7 364 aaPredicted RBP11.1□□□□□ -0.63
RFFL-210ENST00000582308 CCDC102AQ96A19 550 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 UBA5Q9GZZ9 404 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 RPAP3Q9H6T3 665 aaPredicted RBP11.1□□□□□ -0.63
RFFL-210ENST00000582308 FBXO28Q9NVF7 368 aa11.1□□□□□ -0.63
RFFL-210ENST00000582308 RBM28Q9NW13 759 aaKnown RBP11.1□□□□□ -0.63
RFFL-210ENST00000582308 RASSF10A6NK89 507 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 TMEM232C9JQI7 657 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 CYTH3O43739 400 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 CETPP11597 493 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 GNAQP50148 359 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 GTF2A2P52657 109 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 HTRA3P83110 453 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 BECN1Q14457 450 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 DEFB115Q30KQ5 88 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 CYP4F22Q6NT55 531 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 BTNL9Q6UXG8 535 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 FASTKD5Q7L8L6 764 aaKnown RBP11.09□□□□□ -0.63
RFFL-210ENST00000582308 CCDC82Q8N4S0 544 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 BRI3BPQ8WY22 251 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 LZTS2Q9BRK4 669 aa11.09□□□□□ -0.63
RFFL-210ENST00000582308 ISY1Q9ULR0 285 aaKnown RBP11.09□□□□□ -0.63
RFFL-210ENST00000582308 CCL15-CCL14A0A0B4J2E2 113 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 TESPA1A2RU30 521 aaPredicted RBP11.08□□□□□ -0.64
RFFL-210ENST00000582308 USP17L15C9J2P7 530 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 USP17L13C9JLJ4 530 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 USP17L11C9JVI0 530 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 USP17L18D6R9N7 530 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 USP17L22D6RA61 530 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 USP17L17D6RBQ6 530 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 USP17L19D6RCP7 530 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 USP17L20D6RJB6 530 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 CPLX1O14810 134 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 DHX16O60231 1041 aaKnown RBP11.08□□□□□ -0.64
RFFL-210ENST00000582308 JAK2O60674 1132 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 PLA2G6O60733 806 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 PPFIA3O75145 1194 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 IFNAR1P17181 557 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 SMARCA1P28370 1054 aa11.08□□□□□ -0.64
RFFL-210ENST00000582308 HOXA7P31268 230 aaPredicted RBP11.08□□□□□ -0.64
RFFL-210ENST00000582308 SLC4A3P48751 1232 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms