RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 MTMR7Q9Y216 660 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 AFG3L2Q9Y4W6 797 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 STK36Q9NRP7 1315 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 PTPDC1A2A3K4 754 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 KLRF2D3W0D1 207 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 RAD21O60216 631 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 CTDNEP1O95476 244 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 BMP3P12645 472 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 FSTL1Q12841 308 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 PPIL2Q13356 520 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 CCDC96Q2M329 555 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 ZNF784Q8NCA9 323 aaPredicted RBP12.48□□□□□ -0.41
SS18-213ENST00000579640 C12orf42Q96LP6 360 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 RNF26Q9BY78 433 aaPredicted RBP12.48□□□□□ -0.41
SS18-213ENST00000579640 CXCL11O14625 94 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 WDR46O15213 610 aaKnown RBP12.47□□□□□ -0.41
SS18-213ENST00000579640 PLEKHA8P1O95397 391 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 PDIA4P13667 645 aaKnown RBP12.47□□□□□ -0.41
SS18-213ENST00000579640 GJB2P29033 226 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 SSRP1Q08945 709 aaKnown RBP12.47□□□□□ -0.41
SS18-213ENST00000579640 MTMR2Q13614 643 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 SH3D19Q5HYK7 790 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 CST9Q5W186 159 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 STAG2Q8N3U4 1231 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 SPRYD3Q8NCJ5 442 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 SLC10A4Q96EP9 437 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 CLMNQ96JQ2 1002 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 SPZ1Q9BXG8 430 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 FOXD4L1Q9NU39 408 aa12.47□□□□□ -0.41
SS18-213ENST00000579640 FRMPD2Q68DX3 1309 aaPredicted RBP12.46□□□□□ -0.41
SS18-213ENST00000579640 PRPF3O43395 683 aaKnown RBP12.46□□□□□ -0.41
SS18-213ENST00000579640 JAK2O60674 1132 aa12.46□□□□□ -0.41
SS18-213ENST00000579640 PLA2G6O60733 806 aa12.46□□□□□ -0.41
SS18-213ENST00000579640 FMNL1O95466 1100 aaPredicted RBP12.46□□□□□ -0.41
SS18-213ENST00000579640 AKAP17AQ02040 695 aaKnown RBP12.46□□□□□ -0.41
SS18-213ENST00000579640 FUT2Q10981 343 aa12.46□□□□□ -0.41
SS18-213ENST00000579640 NBPF11Q86T75 865 aa12.46□□□□□ -0.41
SS18-213ENST00000579640 SRBD1Q8N5C6 995 aaKnown RBP12.46□□□□□ -0.41
SS18-213ENST00000579640 FAM184AQ8NB25 1140 aa12.46□□□□□ -0.41
SS18-213ENST00000579640 WASF1Q92558 559 aa12.46□□□□□ -0.41
SS18-213ENST00000579640 TMOD4Q9NZQ9 345 aa12.46□□□□□ -0.41
SS18-213ENST00000579640 KCNH4Q9UQ05 1017 aa12.46□□□□□ -0.41
SS18-213ENST00000579640 CNTNAP5Q8WYK1 1306 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 TRIM75PA6NK02 468 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 DEXIO95424 95 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 GOLGA8HP0CJ92 632 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 PDCP20941 246 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 ZYXQ15942 572 aaKnown RBP12.46□□□□□ -0.42
SS18-213ENST00000579640 BTNL9Q6UXG8 535 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 KCTD1Q719H9 257 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 RASGRP2Q7LDG7 609 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 SPICE1Q8N0Z3 855 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 OPTNQ96CV9 577 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 OTUD5Q96G74 571 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 SLC26A6Q9BXS9 759 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 GPCPD1Q9NPB8 672 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 EMILIN3Q9NT22 766 aa12.46□□□□□ -0.42
SS18-213ENST00000579640 ORC3Q9UBD5 711 aaPredicted RBP12.46□□□□□ -0.42
SS18-213ENST00000579640 ISY1Q9ULR0 285 aaKnown RBP12.46□□□□□ -0.42
SS18-213ENST00000579640 KIAA1755Q5JYT7 1200 aa12.45□□□□□ -0.42
SS18-213ENST00000579640 FAM160B2Q86V87 743 aa12.45□□□□□ -0.42
SS18-213ENST00000579640 RGS22Q8NE09 1264 aa12.45□□□□□ -0.42
SS18-213ENST00000579640 CHURC1Q8WUH1 139 aa12.45□□□□□ -0.42
SS18-213ENST00000579640 PHKBQ93100 1093 aa12.45□□□□□ -0.42
SS18-213ENST00000579640 DDX11Q96FC9 970 aa12.45□□□□□ -0.42
SS18-213ENST00000579640 RIOX1Q9H6W3 641 aa12.45□□□□□ -0.42
SS18-213ENST00000579640 FEM1BQ9UK73 627 aa12.45□□□□□ -0.42
SS18-213ENST00000579640 CIZ1Q9ULV3 898 aaPredicted RBP12.45□□□□□ -0.42
SS18-213ENST00000579640 PTPRFP10586 1907 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 A0A0G2JLL6 359 aaPredicted RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 TMEM232C9JQI7 657 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 IRF6O14896 467 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 FDPSP14324 419 aaKnown RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 VCAM1P19320 739 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 STAT2P52630 851 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 HMGCS2P54868 508 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 HUNKP57058 714 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 FAM83BQ5T0W9 1011 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 PRRT2Q7Z6L0 340 aaPredicted RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 CMTR1Q8N1G2 835 aaKnown RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 CCDC82Q8N4S0 544 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 PROCA1Q8NCQ7 364 aaPredicted RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 CYTH3O43739 400 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 ZBTB48P10074 688 aaPredicted RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 DDIT3P35638 169 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 TTBK2Q6IQ55 1244 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 CNKSR2Q8WXI2 1034 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 RRP36Q96EU6 259 aaKnown RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 WNK4Q96J92 1243 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 NUP88Q99567 741 aaPredicted RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 UBA5Q9GZZ9 404 aa12.44□□□□□ -0.42
SS18-213ENST00000579640 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 V9GY48 417 aaPredicted RBP12.44□□□□□ -0.42
SS18-213ENST00000579640 MYH6P13533 1939 aa12.43□□□□□ -0.42
SS18-213ENST00000579640 LOC285556D6RIA3 1793 aa12.43□□□□□ -0.42
SS18-213ENST00000579640 TMEM88BA6NKF7 163 aa12.43□□□□□ -0.42
SS18-213ENST00000579640 IKQ13123 557 aaPredicted RBP12.43□□□□□ -0.42
SS18-213ENST00000579640 SNAPC2Q13487 334 aa12.43□□□□□ -0.42
SS18-213ENST00000579640 SYDE2Q5VT97 1194 aa12.43□□□□□ -0.42
SS18-213ENST00000579640 FASTKD5Q7L8L6 764 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms