RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 RAB27AP51159 221 aa7.42□□□□□ -1.22
VPS53-219ENST00000576019 HDAC1Q13547 482 aaPredicted RBP7.42□□□□□ -1.22
VPS53-219ENST00000576019 SPTY2D1Q68D10 685 aaPredicted RBP7.42□□□□□ -1.22
VPS53-219ENST00000576019 C11orf96Q7Z7L8 435 aa7.42□□□□□ -1.22
VPS53-219ENST00000576019 ASPSCR1Q9BZE9 553 aa7.42□□□□□ -1.22
VPS53-219ENST00000576019 ARNT2Q9HBZ2 717 aa7.42□□□□□ -1.22
VPS53-219ENST00000576019 PRDM11Q9NQV5 511 aa7.42□□□□□ -1.22
VPS53-219ENST00000576019 POLR3KQ9Y2Y1 108 aaPredicted RBP7.42□□□□□ -1.22
VPS53-219ENST00000576019 IQGAP3Q86VI3 1631 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 A0A096LPE4 126 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 A0A1W2PPZ6 126 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 GSG1L2A8MUP6 293 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 CENPBP07199 599 aaPredicted RBP7.41□□□□□ -1.22
VPS53-219ENST00000576019 TSPY4P0CV99 314 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 TSPY10P0CW01 314 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 TIMP2P16035 220 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 CTSOP43234 321 aaPredicted RBP7.41□□□□□ -1.22
VPS53-219ENST00000576019 BRD3Q15059 726 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 AKAP4Q5JQC9 854 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 HGSNATQ68CP4 663 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 PRICKLE2Q7Z3G6 844 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 ZNF598Q86UK7 904 aaKnown RBP7.41□□□□□ -1.22
VPS53-219ENST00000576019 MYO1HQ8N1T3 1032 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 AFAP1L2Q8N4X5 818 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 FAM122AQ96E09 287 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 IL17RAQ96F46 866 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 TARS2Q9BW92 718 aaKnown RBP7.41□□□□□ -1.22
VPS53-219ENST00000576019 EHMT1Q9H9B1 1298 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 TMEM39AQ9NV64 488 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 ZIM2Q9NZV7 527 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 TRIOBPQ9H2D6 2365 aa7.41□□□□□ -1.22
VPS53-219ENST00000576019 PKD1L2Q7Z442 2459 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 MYL1P05976 194 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 VEGFAP15692 232 aaPredicted RBP7.4□□□□□ -1.22
VPS53-219ENST00000576019 GUCY2CP25092 1073 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 L1CAMP32004 1257 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 LAPTM4AQ15012 233 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 SLC10A6Q3KNW5 377 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 HSP90AB4PQ58FF6 505 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 FOXB2Q5VYV0 432 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 CNNM4Q6P4Q7 775 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 VHLLQ6RSH7 139 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 MEIOBQ8N635 442 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 ZBTB38Q8NAP3 1195 aaPredicted RBP7.4□□□□□ -1.22
VPS53-219ENST00000576019 GAL3ST3Q96A11 431 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 SLC39A13Q96H72 371 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 PCGF6Q9BYE7 350 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 NCOA5Q9HCD5 579 aaKnown RBP7.4□□□□□ -1.22
VPS53-219ENST00000576019 LRRC4BQ9NT99 713 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 ZFATQ9P243 1243 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 KANK1Q14678 1352 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 KIAA0232Q92628 1395 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 SPATA31E1Q6ZUB1 1445 aa7.4□□□□□ -1.22
VPS53-219ENST00000576019 CASP8AP2Q9UKL3 1982 aa7.4□□□□□ -1.23
VPS53-219ENST00000576019 MUC3AQ02505 3323 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 AKAP12Q02952 1782 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 KNDC1Q76NI1 1749 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 NHSQ6T4R5 1651 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 ALS2Q96Q42 1657 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 CASKIN1Q8WXD9 1431 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 ERBINQ96RT1 1412 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 KIF4AO95239 1232 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 RHOQP17081 205 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 BMP6P22004 513 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 NEK2P51955 445 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 DIEXFQ68CQ4 756 aaKnown RBP7.39□□□□□ -1.23
VPS53-219ENST00000576019 STRA8Q7Z7C7 330 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 NLRP8Q86W28 1048 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 CHPFQ8IZ52 775 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 MTMR8Q96EF0 704 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 NSUN5Q96P11 429 aaKnown RBP7.39□□□□□ -1.23
VPS53-219ENST00000576019 BHLHE41Q9C0J9 482 aaPredicted RBP7.39□□□□□ -1.23
VPS53-219ENST00000576019 GPAMQ9HCL2 828 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 C11orf16Q9NQ32 467 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 TERF2IPQ9NYB0 399 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 PNMA2Q9UL42 364 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 MAPRE3Q9UPY8 281 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 SAMM50Q9Y512 469 aa7.39□□□□□ -1.23
VPS53-219ENST00000576019 PIK3C2AO00443 1686 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 QRICH2Q9H0J4 1663 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 A0A1B0GTH6 734 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 CCDC189A1A4V9 331 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 RASSF10A6NK89 507 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 AKAP10O43572 662 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 SUSD5O60279 629 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 RFPL3O75679 317 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 PSAPP07602 524 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 HYAL2Q12891 473 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 CCINQ13939 588 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 DHX8Q14562 1220 aaKnown RBP7.38□□□□□ -1.23
VPS53-219ENST00000576019 ZYXQ15942 572 aaKnown RBP7.38□□□□□ -1.23
VPS53-219ENST00000576019 LONRF2Q1L5Z9 754 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 FOXD4L6Q3SYB3 417 aaPredicted RBP7.38□□□□□ -1.23
VPS53-219ENST00000576019 RPS26P11Q5JNZ5 115 aaPredicted RBP7.38□□□□□ -1.23
VPS53-219ENST00000576019 ZNF697Q5TEC3 545 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 LLGL2Q6P1M3 1020 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 KSR2Q6VAB6 950 aa7.38□□□□□ -1.23
VPS53-219ENST00000576019 FOXD4L3Q6VB84 417 aaPredicted RBP7.38□□□□□ -1.23
VPS53-219ENST00000576019 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.38□□□□□ -1.23
VPS53-219ENST00000576019 TRIM67Q6ZTA4 783 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms