RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 CREG2Q8IUH2 290 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 OR6P1Q8NGX9 317 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 SYTL5Q8TDW5 730 aaPredicted RBP6.56□□□□□ -1.36
NUP88-202ENST00000570937 ALPK1Q96QP1 1244 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 SRRTQ9BXP5 876 aaKnown RBP6.56□□□□□ -1.36
NUP88-202ENST00000570937 HDAC8Q9BY41 377 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 KRTAP4-7Q9BYR0 210 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 C19orf73Q9NVV2 129 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 DUSP13Q9UII6 198 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 CTNND2Q9UQB3 1225 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 INPP5FQ9Y2H2 1132 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 ERCC6Q03468 1493 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 GDNFP39905 211 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 PMS1P54277 932 aaKnown RBP6.55□□□□□ -1.36
NUP88-202ENST00000570937 EIF6P56537 245 aaKnown RBP6.55□□□□□ -1.36
NUP88-202ENST00000570937 CCDC81Q6ZN84 652 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 C19orf47Q8N9M1 422 aaKnown RBP6.55□□□□□ -1.36
NUP88-202ENST00000570937 DAGLBQ8NCG7 672 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 SMARCC1Q92922 1105 aaPredicted RBP6.55□□□□□ -1.36
NUP88-202ENST00000570937 ASIC4Q96FT7 647 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 SHDQ96IW2 340 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 ZNF512BQ96KM6 892 aaPredicted RBP6.55□□□□□ -1.36
NUP88-202ENST00000570937 FMNL2Q96PY5 1086 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 CRBNQ96SW2 442 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 ASCC2Q9H1I8 757 aaPredicted RBP6.55□□□□□ -1.36
NUP88-202ENST00000570937 PRR13Q9NZ81 148 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 STRIP2Q9ULQ0 834 aa6.55□□□□□ -1.36
NUP88-202ENST00000570937 ATF4P18848 351 aaPredicted RBP6.54□□□□□ -1.36
NUP88-202ENST00000570937 NASPP49321 788 aaPredicted RBP6.54□□□□□ -1.36
NUP88-202ENST00000570937 EGR3Q06889 387 aa6.54□□□□□ -1.36
NUP88-202ENST00000570937 ZYXQ15942 572 aaKnown RBP6.54□□□□□ -1.36
NUP88-202ENST00000570937 CLEC16AQ2KHT3 1053 aa6.54□□□□□ -1.36
NUP88-202ENST00000570937 UNC5AQ6ZN44 842 aa6.54□□□□□ -1.36
NUP88-202ENST00000570937 RUFY4Q6ZNE9 571 aa6.54□□□□□ -1.36
NUP88-202ENST00000570937 PRDM14Q9GZV8 571 aa6.54□□□□□ -1.36
NUP88-202ENST00000570937 MKRN2Q9H000 416 aaKnown RBP6.54□□□□□ -1.36
NUP88-202ENST00000570937 TMEM59LQ9UK28 342 aa6.54□□□□□ -1.36
NUP88-202ENST00000570937 ZNF281Q9Y2X9 895 aa6.54□□□□□ -1.36
NUP88-202ENST00000570937 PCDHA11Q9Y5I1 949 aa6.54□□□□□ -1.36
NUP88-202ENST00000570937 CADPSQ9ULU8 1353 aa6.54□□□□□ -1.36
NUP88-202ENST00000570937 PDS5BQ9NTI5 1447 aa6.53□□□□□ -1.36
NUP88-202ENST00000570937 E9PSI1 815 aa6.53□□□□□ -1.36
NUP88-202ENST00000570937 SIGLEC6O43699 453 aa6.53□□□□□ -1.36
NUP88-202ENST00000570937 LTKP29376 864 aa6.53□□□□□ -1.36
NUP88-202ENST00000570937 SNW1Q13573 536 aaKnown RBP6.53□□□□□ -1.36
NUP88-202ENST00000570937 AUHQ13825 339 aaKnown RBP6.53□□□□□ -1.36
NUP88-202ENST00000570937 ANKRD39Q53RE8 183 aa6.53□□□□□ -1.36
NUP88-202ENST00000570937 TMC3Q7Z5M5 1100 aa6.53□□□□□ -1.36
NUP88-202ENST00000570937 ZNF655Q8N720 491 aaPredicted RBP6.53□□□□□ -1.36
NUP88-202ENST00000570937 SLAMF8Q9P0V8 285 aa6.53□□□□□ -1.36
NUP88-202ENST00000570937 SLC12A7Q9Y666 1083 aa6.53□□□□□ -1.36
NUP88-202ENST00000570937 LAMC3Q9Y6N6 1575 aa6.52□□□□□ -1.36
NUP88-202ENST00000570937 CARMIL2Q6F5E8 1435 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 TOP2AP11388 1531 aaKnown RBP6.52□□□□□ -1.37
NUP88-202ENST00000570937 DNAJC25-GNG10A0A024R161 153 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 C9IYK1 514 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 AFMP43652 599 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 TEKQ02763 1124 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 BBS9Q3SYG4 887 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 RALGPS1Q5JS13 557 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 RNF111Q6ZNA4 994 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 C7orf61Q8IZ16 206 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 USHBP1Q8N6Y0 703 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 TCTN2Q96GX1 697 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 ZNF214Q9UL59 606 aaPredicted RBP6.52□□□□□ -1.37
NUP88-202ENST00000570937 PCDHB12Q9Y5F1 795 aa6.52□□□□□ -1.37
NUP88-202ENST00000570937 LTBP3Q9NS15 1303 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 FAM86C2PA6NEL3 165 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 SHOXO15266 292 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 PRAMEF1O95521 474 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 TXKP42681 527 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 CASP7P55210 303 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 LCE1DQ5T752 114 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 TTC6Q86TZ1 520 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 PPFIBP1Q86W92 1011 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 LINC00116Q8NCU8 138 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 TINF2Q9BSI4 451 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 ADAMTS10Q9H324 1103 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 CAPN10Q9HC96 672 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 CHST7Q9NS84 486 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 RNF114Q9Y508 228 aa6.51□□□□□ -1.37
NUP88-202ENST00000570937 A0A1W2PQH9 124 aa6.5□□□□□ -1.37
NUP88-202ENST00000570937 HPXP02790 462 aa6.5□□□□□ -1.37
NUP88-202ENST00000570937 ZGLP1P0C6A0 271 aa6.5□□□□□ -1.37
NUP88-202ENST00000570937 GNL2Q13823 731 aaKnown RBP6.5□□□□□ -1.37
NUP88-202ENST00000570937 VPS37DQ86XT2 251 aa6.5□□□□□ -1.37
NUP88-202ENST00000570937 CCDC144CPQ8IYA2 1237 aa6.5□□□□□ -1.37
NUP88-202ENST00000570937 FAM168AQ92567 244 aa6.5□□□□□ -1.37
NUP88-202ENST00000570937 DHX38Q92620 1227 aaKnown RBP6.5□□□□□ -1.37
NUP88-202ENST00000570937 PHAXQ9H814 394 aaKnown RBP6.5□□□□□ -1.37
NUP88-202ENST00000570937 FBXL21Q9UKT6 434 aa6.5□□□□□ -1.37
NUP88-202ENST00000570937 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.5□□□□□ -1.37
NUP88-202ENST00000570937 NESP48681 1621 aa6.5□□□□□ -1.37
NUP88-202ENST00000570937 PCBP3P57721 371 aaKnown RBP6.49□□□□□ -1.37
NUP88-202ENST00000570937 AXDND1Q5T1B0 1012 aaPredicted RBP6.49□□□□□ -1.37
NUP88-202ENST00000570937 ZSWIM9Q86XI8 627 aa6.49□□□□□ -1.37
NUP88-202ENST00000570937 PDZD8Q8NEN9 1154 aa6.49□□□□□ -1.37
NUP88-202ENST00000570937 CPLX3Q8WVH0 158 aa6.49□□□□□ -1.37
NUP88-202ENST00000570937 GFOD1Q9NXC2 390 aa6.49□□□□□ -1.37
NUP88-202ENST00000570937 BMP8BP34820 402 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms