RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CTDSPL2Q05D32 466 aa24.11■■□□□ 1.45
CLK3-225ENST00000569063 MAP2K5Q13163 448 aa24.11■■□□□ 1.45
CLK3-225ENST00000569063 FAM47AQ5JRC9 791 aa24.11■■□□□ 1.45
CLK3-225ENST00000569063 FAM83BQ5T0W9 1011 aa24.11■■□□□ 1.45
CLK3-225ENST00000569063 WDR78Q5VTH9 848 aa24.11■■□□□ 1.45
CLK3-225ENST00000569063 APBA2Q99767 749 aa24.11■■□□□ 1.45
CLK3-225ENST00000569063 IVNS1ABPQ9Y6Y0 642 aa24.11■■□□□ 1.45
CLK3-225ENST00000569063 ZMYM6O95789 1325 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 CCDC171Q6TFL3 1326 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 RPTORQ8N122 1335 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 RAD21O60216 631 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 NDUFB10O96000 172 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 MFAP1P55081 439 aaKnown RBP24.1■■□□□ 1.45
CLK3-225ENST00000569063 TRIM32Q13049 653 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 GRB14Q14449 540 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 MAP3K21Q5TCX8 1036 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 FBXO28Q9NVF7 368 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 PPP1R9AQ9ULJ8 1098 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 PARP14Q460N5 1801 aa24.1■■□□□ 1.45
CLK3-225ENST00000569063 STRNO43815 780 aa24.09■■□□□ 1.45
CLK3-225ENST00000569063 FGRP09769 529 aa24.09■■□□□ 1.45
CLK3-225ENST00000569063 ZKSCAN1P17029 563 aaPredicted RBP24.09■■□□□ 1.45
CLK3-225ENST00000569063 PDE4AP27815 886 aa24.09■■□□□ 1.45
CLK3-225ENST00000569063 PRPF38BQ5VTL8 546 aaKnown RBP24.09■■□□□ 1.45
CLK3-225ENST00000569063 DEFB118Q96PH6 123 aa24.09■■□□□ 1.45
CLK3-225ENST00000569063 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.09■■□□□ 1.45
CLK3-225ENST00000569063 MROH8Q9H579 483 aa24.09■■□□□ 1.45
CLK3-225ENST00000569063 HMX1Q9NP08 348 aaPredicted RBP24.09■■□□□ 1.45
CLK3-225ENST00000569063 HIP1O00291 1037 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 HOXC6P09630 235 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 ERCC3P19447 782 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 TMEM132BQ14DG7 1078 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 PPP4R3BQ5MIZ7 849 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 UBE2Q1Q7Z7E8 422 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 GMCL1P1Q8NEA9 526 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 CRISPLD2Q9H0B8 497 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 INCENPQ9NQS7 918 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 TACC3Q9Y6A5 838 aa24.08■■□□□ 1.45
CLK3-225ENST00000569063 VWA5AO00534 786 aa24.07■■□□□ 1.44
CLK3-225ENST00000569063 ORC4O43929 436 aa24.07■■□□□ 1.44
CLK3-225ENST00000569063 PLS1Q14651 629 aa24.07■■□□□ 1.44
CLK3-225ENST00000569063 CCL14Q16627 93 aa24.07■■□□□ 1.44
CLK3-225ENST00000569063 SAMD1Q6SPF0 538 aaPredicted RBP24.07■■□□□ 1.44
CLK3-225ENST00000569063 NUP88Q99567 741 aaPredicted RBP24.07■■□□□ 1.44
CLK3-225ENST00000569063 TSPY2A6NKD2 308 aa24.06■■□□□ 1.44
CLK3-225ENST00000569063 SLC25A27O95847 323 aa24.06■■□□□ 1.44
CLK3-225ENST00000569063 TFRCP02786 760 aaKnown RBP24.06■■□□□ 1.44
CLK3-225ENST00000569063 PRKAR2AP13861 404 aaKnown RBP24.06■■□□□ 1.44
CLK3-225ENST00000569063 CWC27Q6UX04 472 aaKnown RBP24.06■■□□□ 1.44
CLK3-225ENST00000569063 ABRAQ8N0Z2 381 aa24.06■■□□□ 1.44
CLK3-225ENST00000569063 SLF1Q9BQI6 1058 aa24.06■■□□□ 1.44
CLK3-225ENST00000569063 DIAPH3Q9NSV4 1193 aa24.06■■□□□ 1.44
CLK3-225ENST00000569063 MYH4Q9Y623 1939 aa24.06■■□□□ 1.44
CLK3-225ENST00000569063 CACNB2Q08289 660 aaPredicted RBP24.05■■□□□ 1.44
CLK3-225ENST00000569063 LRRC47Q8N1G4 583 aaKnown RBP24.05■■□□□ 1.44
CLK3-225ENST00000569063 PRPF38AQ8NAV1 312 aaKnown RBP24.05■■□□□ 1.44
CLK3-225ENST00000569063 REPS2Q8NFH8 660 aa24.05■■□□□ 1.44
CLK3-225ENST00000569063 IL17RBQ9NRM6 502 aa24.05■■□□□ 1.44
CLK3-225ENST00000569063 RANBP6O60518 1105 aaKnown RBP24.04■■□□□ 1.44
CLK3-225ENST00000569063 ADORA2AP29274 412 aa24.04■■□□□ 1.44
CLK3-225ENST00000569063 NOVP48745 357 aa24.04■■□□□ 1.44
CLK3-225ENST00000569063 TTC22Q5TAA0 569 aa24.04■■□□□ 1.44
CLK3-225ENST00000569063 NCAPG2Q86XI2 1143 aa24.04■■□□□ 1.44
CLK3-225ENST00000569063 RIOX2Q8IUF8 465 aa24.04■■□□□ 1.44
CLK3-225ENST00000569063 NPLOC4Q8TAT6 608 aa24.04■■□□□ 1.44
CLK3-225ENST00000569063 FLRT1Q9NZU1 646 aa24.04■■□□□ 1.44
CLK3-225ENST00000569063 ZNF214Q9UL59 606 aaPredicted RBP24.04■■□□□ 1.44
CLK3-225ENST00000569063 ZNF236Q9UL36 1845 aa24.04■■□□□ 1.44
CLK3-225ENST00000569063 IGHA2P01877 340 aa24.03■■□□□ 1.44
CLK3-225ENST00000569063 PCP11498 1178 aaKnown RBP24.03■■□□□ 1.44
CLK3-225ENST00000569063 STAT3P40763 770 aa24.03■■□□□ 1.44
CLK3-225ENST00000569063 SLFN13Q68D06 897 aa24.03■■□□□ 1.44
CLK3-225ENST00000569063 DPP9Q86TI2 863 aa24.03■■□□□ 1.44
CLK3-225ENST00000569063 FEM1BQ9UK73 627 aa24.03■■□□□ 1.44
CLK3-225ENST00000569063 PDE4DIPQ5VU43 2346 aa24.02■■□□□ 1.44
CLK3-225ENST00000569063 FARP2O94887 1054 aaPredicted RBP24.02■■□□□ 1.44
CLK3-225ENST00000569063 GSPT1P15170 499 aaKnown RBP24.02■■□□□ 1.44
CLK3-225ENST00000569063 COPB2P35606 906 aa24.02■■□□□ 1.44
CLK3-225ENST00000569063 MFSD14CQ5VZR4 134 aa24.02■■□□□ 1.44
CLK3-225ENST00000569063 GMCL1Q96IK5 515 aa24.02■■□□□ 1.44
CLK3-225ENST00000569063 STX8Q9UNK0 236 aa24.02■■□□□ 1.44
CLK3-225ENST00000569063 COL11A1P12107 1806 aaPredicted RBP24.02■■□□□ 1.44
CLK3-225ENST00000569063 NMT2O60551 498 aa24.01■■□□□ 1.43
CLK3-225ENST00000569063 FCER1AP12319 257 aa24.01■■□□□ 1.43
CLK3-225ENST00000569063 BMP3P12645 472 aa24.01■■□□□ 1.43
CLK3-225ENST00000569063 HAND2P61296 217 aa24.01■■□□□ 1.43
CLK3-225ENST00000569063 AKNAD1Q5T1N1 836 aa24.01■■□□□ 1.43
CLK3-225ENST00000569063 ANKLE1Q8NAG6 615 aa24.01■■□□□ 1.43
CLK3-225ENST00000569063 NBPF3Q9H094 633 aa24.01■■□□□ 1.43
CLK3-225ENST00000569063 TCP11L1Q9NUJ3 509 aa24.01■■□□□ 1.43
CLK3-225ENST00000569063 SLC5A4Q9NY91 659 aa24.01■■□□□ 1.43
CLK3-225ENST00000569063 ATP2A1O14983 1001 aa24■■□□□ 1.43
CLK3-225ENST00000569063 COBLO75128 1261 aa24■■□□□ 1.43
CLK3-225ENST00000569063 OLFML2BQ68BL8 750 aa24■■□□□ 1.43
CLK3-225ENST00000569063 MFSD6Q6ZSS7 791 aa24■■□□□ 1.43
CLK3-225ENST00000569063 STAG1Q8WVM7 1258 aa24■■□□□ 1.43
CLK3-225ENST00000569063 TOMM22Q9NS69 142 aa24■■□□□ 1.43
CLK3-225ENST00000569063 OGDHLQ9ULD0 1010 aa24■■□□□ 1.43
CLK3-225ENST00000569063 ZBED4O75132 1171 aa23.99■■□□□ 1.43
CLK3-225ENST00000569063 CCND3P30281 292 aaPredicted RBP23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms