RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 GMCL1P1Q8NEA9 526 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 ATG4CQ96DT6 458 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 MOV10L1Q9BXT6 1211 aaKnown RBP22.19■■□□□ 1.14
CLN3-227ENST00000567495 MROH8Q9H579 483 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 PPP1R9AQ9ULJ8 1098 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 TSPY2A6NKD2 308 aa22.18■■□□□ 1.14
CLN3-227ENST00000567495 NDUFB10O96000 172 aa22.18■■□□□ 1.14
CLN3-227ENST00000567495 ZKSCAN1P17029 563 aaPredicted RBP22.18■■□□□ 1.14
CLN3-227ENST00000567495 FAM47AQ5JRC9 791 aa22.18■■□□□ 1.14
CLN3-227ENST00000567495 U2AF1L4Q8WU68 220 aaKnown RBP22.18■■□□□ 1.14
CLN3-227ENST00000567495 PAK6Q9NQU5 681 aaPredicted RBP22.18■■□□□ 1.14
CLN3-227ENST00000567495 RBBP6Q7Z6E9 1792 aaKnown RBP22.17■■□□□ 1.14
CLN3-227ENST00000567495 RPTORQ8N122 1335 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 SGPL1O95470 568 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 SLC25A27O95847 323 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 HOXC6P09630 235 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 COPB2P35606 906 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 CTDSPL2Q05D32 466 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 GRB14Q14449 540 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 CWC27Q6UX04 472 aaKnown RBP22.17■■□□□ 1.14
CLN3-227ENST00000567495 TRIB2Q92519 343 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 SLF1Q9BQI6 1058 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 HMX1Q9NP08 348 aaPredicted RBP22.17■■□□□ 1.14
CLN3-227ENST00000567495 MYH8P13535 1937 aa22.17■■□□□ 1.14
CLN3-227ENST00000567495 VWA5AO00534 786 aa22.16■■□□□ 1.14
CLN3-227ENST00000567495 RANBP6O60518 1105 aaKnown RBP22.16■■□□□ 1.14
CLN3-227ENST00000567495 ERCC3P19447 782 aa22.16■■□□□ 1.14
CLN3-227ENST00000567495 NT5C2P49902 561 aa22.16■■□□□ 1.14
CLN3-227ENST00000567495 PLS1Q14651 629 aa22.16■■□□□ 1.14
CLN3-227ENST00000567495 TTC22Q5TAA0 569 aa22.16■■□□□ 1.14
CLN3-227ENST00000567495 MAP3K21Q5TCX8 1036 aa22.16■■□□□ 1.14
CLN3-227ENST00000567495 ABRAQ8N0Z2 381 aa22.16■■□□□ 1.14
CLN3-227ENST00000567495 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.16■■□□□ 1.14
CLN3-227ENST00000567495 FBXO28Q9NVF7 368 aa22.16■■□□□ 1.14
CLN3-227ENST00000567495 DOCK3Q8IZD9 2030 aa22.15■■□□□ 1.14
CLN3-227ENST00000567495 PDE4AP27815 886 aa22.15■■□□□ 1.14
CLN3-227ENST00000567495 SAMD1Q6SPF0 538 aaPredicted RBP22.15■■□□□ 1.14
CLN3-227ENST00000567495 PRPF38AQ8NAV1 312 aaKnown RBP22.15■■□□□ 1.14
CLN3-227ENST00000567495 SHISA4Q96DD7 197 aa22.15■■□□□ 1.14
CLN3-227ENST00000567495 DEFB118Q96PH6 123 aa22.15■■□□□ 1.14
CLN3-227ENST00000567495 RNF41Q9H4P4 317 aaPredicted RBP22.15■■□□□ 1.14
CLN3-227ENST00000567495 SLC5A4Q9NY91 659 aa22.15■■□□□ 1.14
CLN3-227ENST00000567495 TMEM132BQ14DG7 1078 aa22.14■■□□□ 1.13
CLN3-227ENST00000567495 PRPF38BQ5VTL8 546 aaKnown RBP22.14■■□□□ 1.13
CLN3-227ENST00000567495 MFSD14CQ5VZR4 134 aa22.14■■□□□ 1.13
CLN3-227ENST00000567495 NCAPG2Q86XI2 1143 aa22.14■■□□□ 1.13
CLN3-227ENST00000567495 RIOX2Q8IUF8 465 aa22.14■■□□□ 1.13
CLN3-227ENST00000567495 NUP88Q99567 741 aaPredicted RBP22.14■■□□□ 1.13
CLN3-227ENST00000567495 CRISPLD2Q9H0B8 497 aa22.14■■□□□ 1.13
CLN3-227ENST00000567495 FEM1BQ9UK73 627 aa22.14■■□□□ 1.13
CLN3-227ENST00000567495 GREB1LQ9C091 1923 aaPredicted RBP22.14■■□□□ 1.13
CLN3-227ENST00000567495 TFRCP02786 760 aaKnown RBP22.13■■□□□ 1.13
CLN3-227ENST00000567495 PRKAR2AP13861 404 aaKnown RBP22.13■■□□□ 1.13
CLN3-227ENST00000567495 STAT3P40763 770 aa22.13■■□□□ 1.13
CLN3-227ENST00000567495 SLFN13Q68D06 897 aa22.13■■□□□ 1.13
CLN3-227ENST00000567495 DPP9Q86TI2 863 aa22.13■■□□□ 1.13
CLN3-227ENST00000567495 LRRC47Q8N1G4 583 aaKnown RBP22.13■■□□□ 1.13
CLN3-227ENST00000567495 GMCL1Q96IK5 515 aa22.13■■□□□ 1.13
CLN3-227ENST00000567495 TOMM22Q9NS69 142 aa22.13■■□□□ 1.13
CLN3-227ENST00000567495 CTNNA3Q9UI47 895 aa22.13■■□□□ 1.13
CLN3-227ENST00000567495 STX8Q9UNK0 236 aa22.13■■□□□ 1.13
CLN3-227ENST00000567495 BRCA2P51587 3418 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 FDX1P10109 184 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 FCER1AP12319 257 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 BMP3P12645 472 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 NOVP48745 357 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 AKNAD1Q5T1N1 836 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 MFSD6Q6ZSS7 791 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 DSCC1Q9BVC3 393 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 TEX13BQ9BXU2 312 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 INCENPQ9NQS7 918 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 IL17RBQ9NRM6 502 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 TCP11L1Q9NUJ3 509 aa22.12■■□□□ 1.13
CLN3-227ENST00000567495 CTDP1Q9Y5B0 961 aaPredicted RBP22.12■■□□□ 1.13
CLN3-227ENST00000567495 ZNF213O14771 459 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 ATP2A1O14983 1001 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 ZBED4O75132 1171 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 FARP2O94887 1054 aaPredicted RBP22.11■■□□□ 1.13
CLN3-227ENST00000567495 ADORA2AP29274 412 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 TRIM32Q13049 653 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 CCL14Q16627 93 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 UBE2Q1Q7Z7E8 422 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 REPS2Q8NFH8 660 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 STAG1Q8WVM7 1258 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 RUFY2Q8WXA3 655 aa22.11■■□□□ 1.13
CLN3-227ENST00000567495 ZNF214Q9UL59 606 aaPredicted RBP22.11■■□□□ 1.13
CLN3-227ENST00000567495 GSPT1P15170 499 aaKnown RBP22.1■■□□□ 1.13
CLN3-227ENST00000567495 SLC1A4P43007 532 aa22.1■■□□□ 1.13
CLN3-227ENST00000567495 HAND2P61296 217 aa22.1■■□□□ 1.13
CLN3-227ENST00000567495 CACNB2Q08289 660 aaPredicted RBP22.1■■□□□ 1.13
CLN3-227ENST00000567495 RRP12Q5JTH9 1297 aaKnown RBP22.1■■□□□ 1.13
CLN3-227ENST00000567495 OLFML2BQ68BL8 750 aa22.1■■□□□ 1.13
CLN3-227ENST00000567495 ANKLE1Q8NAG6 615 aa22.1■■□□□ 1.13
CLN3-227ENST00000567495 CHURC1Q8WUH1 139 aa22.1■■□□□ 1.13
CLN3-227ENST00000567495 TNRC18O15417 2968 aaPredicted RBP22.1■■□□□ 1.13
CLN3-227ENST00000567495 RAD50Q92878 1312 aa22.09■■□□□ 1.13
CLN3-227ENST00000567495 PLA2G6O60733 806 aa22.09■■□□□ 1.13
CLN3-227ENST00000567495 OAZ1P54368 228 aa22.09■■□□□ 1.13
CLN3-227ENST00000567495 FAM160B2Q86V87 743 aa22.09■■□□□ 1.13
CLN3-227ENST00000567495 TTC14Q96N46 770 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms