RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 POLG2Q9UHN1 485 aa6.35□□□□□ -1.39
VPS35P1-201ENST00000563400 ATXN7L1Q9ULK2 861 aaPredicted RBP6.35□□□□□ -1.39
VPS35P1-201ENST00000563400 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.35□□□□□ -1.39
VPS35P1-201ENST00000563400 TCOF1Q13428 1488 aaKnown RBP6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 hCG_1984214I3L0E3 225 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 CPEP16870 476 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 LORP23490 312 aaPredicted RBP6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 RNF219Q5W0B1 726 aaPredicted RBP6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 LVRNQ6Q4G3 990 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 CNTD1Q8N815 330 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 C1orf127Q8N9H9 656 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 PPHLN1Q8NEY8 458 aaKnown RBP6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 SLC7A3Q8WY07 619 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 KLRG1Q96E93 195 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 EXOC2Q96KP1 924 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 SLC26A8Q96RN1 970 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 OXCT2Q9BYC2 517 aaPredicted RBP6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 ELP3Q9H9T3 547 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 BRMS1Q9HCU9 246 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 FAM13BQ9NYF5 915 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 GTF2IRD1Q9UHL9 959 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 EVLQ9UI08 416 aaPredicted RBP6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 ZNRF3Q9ULT6 936 aa6.34□□□□□ -1.39
VPS35P1-201ENST00000563400 RRBP1Q9P2E9 1410 aaKnown RBP6.34□□□□□ -1.4
VPS35P1-201ENST00000563400 KIF15Q9NS87 1388 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 ABCC1P33527 1531 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 ZMYM4Q5VZL5 1548 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 FAM135AQ9P2D6 1515 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 ZNF644Q9H582 1327 aaPredicted RBP6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 A2MP01023 1474 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 PTPN23Q9H3S7 1636 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 A0A1W2PQH9 124 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 UPK3BL1B0FP48 263 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 UPK3BL2E5RIL1 263 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 RNF225M0QZC1 329 aaPredicted RBP6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 HIP1RO75146 1068 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 CALRP27797 417 aaKnown RBP6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 STK3Q13188 491 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 MLECQ14165 292 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 GALEQ14376 348 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 GRM3Q14832 879 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 PCBP1Q15365 356 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 C1orf228Q6PIY5 440 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 MMS22LQ6ZRQ5 1243 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 TOGARAM2Q6ZUX3 1019 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 ZNF295-AS1Q8N0V1 137 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 SKA1Q96BD8 255 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 ZNF669Q96BR6 464 aaPredicted RBP6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 EHD4Q9H223 541 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 PRDM11Q9NQV5 511 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 DDX20Q9UHI6 824 aaKnown RBP6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 ZBTB21Q9ULJ3 1066 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 PCDHGC4Q9Y5F7 938 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 GPC6Q9Y625 555 aaPredicted RBP6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 DAPK1P53355 1430 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 ERBINQ96RT1 1412 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 DUOX2Q9NRD8 1548 aa6.33□□□□□ -1.4
VPS35P1-201ENST00000563400 CDC42BPAQ5VT25 1732 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 CDC42BPBQ9Y5S2 1711 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 HECW2Q9P2P5 1572 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 ANKRD50Q9ULJ7 1429 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 TRAPPC8Q9Y2L5 1435 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 A0A1W2PNR3 127 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 ATP4AP20648 1035 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 RENBPP51606 427 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 SAFBQ15424 915 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 CCDC96Q2M329 555 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 ALDH1L2Q3SY69 923 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 FAM209AQ5JX71 171 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 ZNF385CQ66K41 422 aaPredicted RBP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 CXorf57Q6NSI4 855 aaKnown RBP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 AGMOQ6ZNB7 445 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 LRRC69Q6ZNQ3 347 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 IFNL2Q8IZJ0 200 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 ATXN2LQ8WWM7 1075 aaKnown RBP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 DDX1Q92499 740 aaKnown RBP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 SECISBP2LQ93073 1101 aaKnown RBP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 KISS1RQ969F8 398 aaPredicted RBP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 LRRC3Q9BY71 257 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 IFT122Q9HBG6 1241 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 LUC7LQ9NQ29 371 aaKnown RBP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 SAGE1Q9NXZ1 904 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 PPP4R2Q9NY27 417 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 ZFATQ9P243 1243 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 ASAP1Q9ULH1 1129 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 PHTF1Q9UMS5 762 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 NOL7Q9UMY1 257 aaKnown RBP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 FRMD4BQ9Y2L6 1034 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 LUC7L2Q9Y383 392 aaKnown RBP6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 RABGAP1Q9Y3P9 1069 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 SYCP2Q9BX26 1530 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 MBD5Q9P267 1494 aa6.32□□□□□ -1.4
VPS35P1-201ENST00000563400 NCOA1Q15788 1441 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 A0A1W2PP55 124 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 ANO9A1A5B4 782 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 PLD2O14939 933 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 ATXN7O15265 892 aaPredicted RBP6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 RHOBTB3O94955 611 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 AGR2O95994 175 aa6.31□□□□□ -1.4
VPS35P1-201ENST00000563400 RBP3P10745 1247 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 279.6 ms